KEGG   Nocardiopsis alba: B005_3559
Entry
B005_3559         CDS       T02218                                 
Name
(GenBank) DEAD/DEAH box helicase family protein
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
nal  Nocardiopsis alba
Brite
KEGG Orthology (KO) [BR:nal00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:nal03400]
    B005_3559
Enzymes [BR:nal01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     B005_3559
    5.6.2.6  RNA 3'-5' helicase
     B005_3559
DNA repair and recombination proteins [BR:nal03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    B005_3559
SSDB
Motif
Pfam: DEAD_assoc WH_Lhr DEAD WH4_Lhr WH3_Lhr WH2_Lhr Helicase_C ResIII HTH_Crp_2 AAA_25 HTH_PafC AbiEi_4
Other DBs
NCBI-ProteinID: AFR10547
UniProt: J7LIT3
LinkDB
Position
complement(3734595..3739103)
AA seq 1502 aa
MTDPLAPFGPATRTWFERAFPSGPTPAQAEAWASVSRGLDTLVVAPTGSGKTLSAFLWAL
DRLSHTPVPEERSHRCRVVYVSPLKALAVDVERNLRRPLAGIAEEAEASGESLSPVTVGV
RTGDTPARERRALASRPPDVLITTPESLFLVLTSKAREGLAGVETVIVDEVHALAGTKRG
AHLALSLERLGALTERRPLRIGLSATVRPREAVAGYLGGARIVAPPDTPRMELRVEAPVP
DLDEPGGPPSPSEGATSDAGARGSVWPHVERRVLDLVEAHRSTIVFTNGRRSAERLCARV
NDLYAERVGATLPVEEVAALVSGQSGQGRGGEAVIARAHHGSMSKAERARIEDDLKAGRL
RCVVATSSLELGVDMGAVDLVVQVGAPPSVASGLQRVGRAGHHVGEVSRGVFLPTHRGDL
LASAVIAGRMREGGIERLEVPRDPLDVLAQQIVSMVAMDDWTVTDLAALVRRASPYADLS
DRVLDAVLDMVSGRYPSDEFAELRPRLVWDREEGILRARPGAQRLAVIGGGTIPDRGLYG
VHLASDGSGGAPTRVGELDEEMVYESRVGDVFVLGSSSWRIEAITADRVLVSPAPGRPGR
LPFWKADTTGRPAELGRAVGALARELGSRSEEEALTLAGESGAGPWAAENLVAYVAEQRE
ATGEVPDDRTVVIERFQDQVGDWRAVVHSPWGARVNGPWAMAIAAGLRERFGIDARVVHG
DDGIVLSLPDVAEGGIGRLGELVDLVSLDPETVEGTVAEELTGSALFASRFRECAARALL
LPRQRPDRRMPLWQQRLRAGHLLSVAGRYGSFPIVLETVRECLRDVFDVPALTELLTDLR
ARRIRVVEVRTPRASPFARTLLMEYTAAFLYEGDAPAAEARAQALTLDPSLLRDLLGGAD
LRELLDPEVVERIDGLLQRTAAPVRDEEGTADLLREVGPLSDEEAEARGVRREWLLDLER
AGRAVRARVAEVERWCAVEDVARLRDALGVPPPPGVPEAFLEPVEAPLLDLVSRYARTHG
PFTVEEAASRLGAEDGVVEEALRTLEDRGRLSRGGFRPGCSGTEWCEVDVLRRLRRGSIE
RLRREVEPVAPEALATFVPLWQRAAPGERSRGPDAVFEAVESLRGTPLVASSLESLVLPA
RVEGYVPAELDALTQAGEVLWAGAGSLPGGDGRLMLFPAEDAPSLTPEPVPPEEGSMTAT
VLEVLRGSGALFFRDVADRAARASGGASVSDADLVAALWELVWAGWVTNDTLAPLRASSG
SGPVPRRSSSRGRRRPTLPTRSGPPTVAGRWSLLPAPDPDPTRRVLARVESRLERDGVLV
KGRQGQGFTSDEYRVLRSLEEAGRVRRGYFVKGLGGAQFALPGAVDRLRASSREASDGAL
DPVVLAASDPANPFGAALPWPEAARSGEGGRPGRSAGAVVVIDGGRPTLYLAKGGRTATT
FGASPEALVRATRAVAGLIGEGSLESLTVERADGGEVFGTPLDAALVAAGFHVTPKGLRI
RR
NT seq 4509 nt   +upstreamnt  +downstreamnt
gtgaccgatcccctggcacccttcggcccggcgacgcggacctggttcgaacgggccttc
ccctccggccccaccccggcccaggccgaggcctgggcctcggtgtcccgaggcctggac
accctggtggtggcccccaccggttcggggaagaccctgtcggccttcctgtgggccctg
gaccggctgtcgcacacccctgtgccggaggagcgttctcaccggtgccgggtggtgtac
gtgtccccgctgaaggccttggccgtggacgtggagcgcaacctgcgccgccccttggcc
gggatcgcggaggaggccgaggcgtcgggcgagtcgttgtccccggtgaccgtgggcgtc
cgcaccggggacacccccgcccgggagcgccgcgcgttggcctcgcgcccgccggacgtc
ctgatcaccacgcccgagtccctgttcctggtgctgacctccaaggcccgggaggggttg
gcgggggtggagacggtcatcgtcgacgaggtgcacgcgctcgccgggaccaagcgaggg
gcccacctggcgttgagtctggagcggctgggcgccttgacggaacgtcgtcccctgcgg
atcggtctgtcggccacggtccgcccccgtgaggccgtggccgggtatctgggcggggca
cggatcgtcgccccgccggacactccgaggatggagctgagggtggaggccccggtcccg
gatctggacgagccgggcggcccgccctccccgtccgagggggcgacgtccgacgccggg
gcacgagggtcggtatggccgcacgtggagcgccgggtgctggacctggtggaggcgcac
cgctccaccatcgtgttcacgaacggccgccgctccgccgagagactgtgcgcccgcgtc
aacgacctgtacgccgaacgcgtcggcgcgaccctgcccgtcgaggaggtcgccgcgctg
gtctccggacagtcggggcagggccggggaggagaggccgtcatcgccagggcccaccac
gggtcgatgtccaaggccgagcgggcacggatcgaggacgacctcaaggcgggccggctg
cgctgcgtggtggccacctccagtctggaactgggggtggacatgggcgccgtcgacctg
gtggtgcaggtgggcgctcccccgtcggtggcgagcggtctgcaacgggtggggcgcgcc
ggccaccacgtgggcgaggtgtcgcgcggggtgttcctgcccacccatcgaggcgatctg
ttggcctccgccgtgatcgccggtcggatgcgcgagggcgggatcgaacgcctggaggtg
ccgcgcgatccgttggacgtgctggcgcagcagatcgtgtccatggtggcgatggacgac
tggacggtgacggatctggcggcgttggtacgccgggcctctccgtacgcggacctgtcc
gatcgggttctggacgcggtgctggacatggtgtcggggcgttacccgtcggacgagttc
gccgagctgcgcccccgtctggtgtgggaccgggaggaggggatcctgcgggcccgcccg
ggggcccagcgactggccgtgatcggcggcgggacgatcccggaccgggggctgtacggg
gtgcacctggcatcggacgggtcgggaggggctcccaccagggtgggcgagctggacgag
gagatggtgtacgagtcgcgggtgggcgacgtgttcgtcctgggttcgtcctcctggcgg
atcgaggcgatcaccgccgaccgggtcctggtctctccggcgccggggcgaccggggcgg
ctgccgttctggaaggccgacaccacggggcgtcccgccgagctgggccgcgcggtgggg
gctctcgcgcgtgagctgggttcccggtcggaggaggaggcgctgacgctggccggtgag
agcggggcgggcccctgggccgcggagaacctcgtggcctacgtggccgaacagcgcgag
gccacgggcgaggtccccgacgatcgcacggtggtgatcgaacgcttccaggatcaggtg
ggcgattggcgcgcggtggtgcactccccctggggcgcccgggtgaacgggccgtgggcg
atggcgatcgccgccgggctccgggaacggttcggaatcgacgcgcgggtggtccacggt
gacgacgggatcgtgctgagccttccggacgtggccgagggcgggatcggccgtctcggc
gagctggtggacctggtgtccctggacccggagacggtggaggggaccgtcgccgaggag
ctcaccgggtcggcgctgttcgcctcccggttccgcgagtgcgcggcgcgggccctgttg
ttgcccaggcagaggccggaccgtcggatgcccttgtggcagcagaggttgcgggccggg
catctcctgtcggtggcgggacggtacggatcgttcccgatcgtgttggagacggtccgc
gagtgcctgcgcgacgtgttcgacgtaccggcgttgacggagctgttgaccgacctccgg
gcgcgacggatccgtgtggtggaggtgcgcaccccgcgggcctctcctttcgcccggacg
ttgttgatggagtacacggccgcgttcctgtacgagggggacgcccccgcggcggaggcg
cgggcccaggcgctcaccctggatccgtcgttgctgcgggacctgttgggcggcgcggat
ctgcgggagctgttggaccccgaggtcgtggaacgcatcgacggtctgttgcagcggacc
gccgccccggtgcgggacgaggaggggacggccgacctgctgcgcgaggtcggaccgttg
agcgacgaggaggccgaggcccgaggggtccgccgggagtggctgctcgatctggaacgg
gccggacgcgcggtgcgcgcgagggtggccgaggtggagcgctggtgcgcggtggaggac
gtggcccgtctgcgcgacgccttgggagtcccaccgcctccgggggtgcccgaggcgttc
ctggagccggtggaggccccgctgctcgacctggtctcccggtacgcgcgcacgcacgga
ccgttcaccgtggaggaggcggcgtcccggctcggggcggaggacggcgtggtggaggag
gcccttcggaccctggaggatcgaggtcggctgtcccggggcgggttccggcccggctgt
tcggggaccgaatggtgcgaggtcgacgtgctgcgccggttgcggcgcgggtcgatcgaa
cggttgcgtcgcgaggtggagccggtcgcgcccgaggcgttggcgacgttcgtcccactg
tggcagcgggccgctccgggcgagcggtcacgcggtccggacgcggtgttcgaagcggtg
gagtcgctgagggggacccctctggtggcgtcgagcctggagtccctggtgctgcccgcc
cgtgtggaggggtacgtcccggcggagttggacgccctgacccaggcgggagaggtgctc
tgggccggcgcggggtcgttgccgggcggggacgggcggctgatgctgttccccgccgag
gacgccccgtcgctgacgcccgaacccgtcccgccagaggaggggtcgatgacggcgacc
gtcctggaggtcctgcggggctcgggggccctgttcttccgggacgtcgccgaccgcgcc
gcccgtgcgtcggggggtgcgtcggtctccgacgccgacctggtggcggccttgtgggag
ctggtgtgggccggatgggtcaccaacgacaccctggccccgctgcgcgcgtcgtcgggt
tcgggccccgtgccgaggcgttcgtcctcgcgcgggcgtcgacgtccgacgttgccgacc
cgttcgggccctcccaccgtggccgggcgttggtcgttgctgcccgcccccgacccggac
ccgacccggcgcgtactggcacgggtggagtcccggctggaacgcgacggtgtgctggtc
aaggggcggcagggccaggggttcacttcggacgagtatcgggtgctgcgctccctggag
gaggcgggccgggtccgtcgggggtacttcgtgaagggtctgggcggggcccagttcgcc
cttcccggagcggtggaccggctgcgcgcctcgtcccgcgaggcgtcggacggggcgttg
gatcccgtggtgctggccgcctcggacccggcgaacccgttcggcgccgcactgccctgg
cccgaggccgcccggagcggggagggcggccgtccggggcgcagcgcgggggccgtggtg
gtgatcgacggaggtcggcccaccctgtacctggcgaagggcgggcggacggccacgacg
ttcggggcctctcccgaggcgttggtccgggcgacccgagcggtggccgggctgatcggc
gagggctcgctggagtcgttgacggtggagcgtgccgacggcggggaggtgttcggcacc
ccgttggacgccgctctggtggcggcgggtttccacgtcacccccaaggggctgcggata
cggcgttga

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