Nocardiopsis alba: B005_4010
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Entry
B005_4010 CDS
T02218
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
nal
Nocardiopsis alba
Brite
KEGG Orthology (KO) [BR:
nal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nal03016
]
B005_4010
Enzymes [BR:
nal01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
B005_4010
Transfer RNA biogenesis [BR:
nal03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
B005_4010
Prokaryotic type
tRNA splicing ligases
B005_4010
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AFR07246
UniProt:
J7L3C7
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All DBs
Position
4203316..4204503
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AA seq
395 aa
AA seq
DB search
MPHTEVPGERVPIRMWADPDTVEPAAMEQLRNVTRMPWTHGLAVMPDVHYGKGATVGSVI
AMRDAVSPAAVGVDIGCGMTAVRTDLTAERLPDDLGRLRSALEATIPVGFHFHDEAIDPA
TVPGLRSGDWDGFWRGFDDLAEAVHPRRERALRQMGTLGGGNHFLEVCLDDDGMVWLVLH
SGSRNIGKELAEHHIGRARDLPHNRDLPDRDLAVFLSGTPEMDAYRRDLFWAQDYARRNR
DVMMGLACRTLEREVPGTGFGQWISCHHNYVAEERYDGVDVLVTRKGAIRAGSGEYGIIP
GSMATGTYVVKGLGNSESFNSASHGAGRRMSRNKARKTFTREDLVEQTRGVECRKDLGVV
DEIPAAYKDLESVIEAQTDLVQVVAHLRQVVCVKG
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
atgcctcacaccgaagttcccggagagcgcgtaccgatccgcatgtgggccgacccggac
acggtcgagcccgccgccatggagcagctgcgcaacgtcacccgcatgccctggacccac
gggctcgcggtgatgcccgacgtccactacggcaagggcgccaccgtcggttcggtcatc
gcgatgcgcgacgcggtcagcccggccgcggtcggggtcgacatcggctgcgggatgacg
gcggtgcgcaccgacctgaccgccgaacgcctgccggacgatctggggcgcctgcggtcc
gccctggaggcgacgatcccggtcgggttccacttccacgacgaggcgatcgaccccgcc
acggtgccgggactgcgcagcggggactgggacgggttctggcggggcttcgacgacctc
gccgaggccgtccacccgcgtcgtgaaagggccctgcgccagatggggaccctgggcgga
ggcaaccacttcctcgaagtgtgtctggacgacgacggcatggtctggctcgtcctgcac
tcgggatcgcgcaacatcggcaaggagctggccgagcaccacatcgggcgggcccgcgac
ctgccgcacaaccgggatctgcccgaccgcgacctggcggtgttcctgtccgggaccccg
gagatggacgcctaccggcgtgatctgttctgggcccaggactacgcccgccgcaaccgc
gacgtcatgatggggctggcctgccggaccctggagcgggaggtgccggggaccggcttc
gggcagtggatctcctgccaccacaactacgtcgcggaggagcgttacgacggggtggac
gtgctcgtcacccgtaagggcgccatccgcgcgggaagcggcgagtacggcatcatcccc
gggagcatggcgacgggaacgtacgtggtcaagggcctgggcaactcggagtcgttcaac
tccgcctcccacggggccgggcgccgtatgagtcggaacaaggcccgcaagaccttcacc
cgggaggacctggtcgaacagaccaggggtgtggagtgccgcaaggacctgggagtcgtg
gacgagatccccgccgcctacaaggacctggaatcggtcatcgaggcccagaccgacctc
gtccaggtggtcgcccacctgcggcaggtcgtctgcgtcaagggctga
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