KEGG   Nocardiopsis alba: B005_4039
Entry
B005_4039         CDS       T02218                                 
Name
(GenBank) DEAD/DEAH box helicase family protein
  KO
K01153  type I restriction enzyme, R subunit [EC:3.1.21.3]
Organism
nal  Nocardiopsis alba
Brite
KEGG Orthology (KO) [BR:nal00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:nal02048]
    B005_4039
Enzymes [BR:nal01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.21  Endodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.21.3  type I site-specific deoxyribonuclease
     B005_4039
Prokaryotic defense system [BR:nal02048]
 Restriction and modification system (R-M system)
  Type I R-M system
   B005_4039
SSDB
Motif
Pfam: SWI2_SNF2 HSDR_N ResIII T1R_D3-like DEAD CheR_N AAA_16
Other DBs
NCBI-ProteinID: AFR07783
UniProt: J7L2A2
LinkDB
Position
4244703..4247873
AA seq 1056 aa
MSPVYDERTFEDHIVSSMLERGWSQGANHHYDPELALDTAELTAFLGATQADVFEELVTR
CGGSIDKAQKTFAKTLAKRIDTEGTLHVLRQGVTIEGLRFRLAYFKPSHTIAENALAEYE
ANRLTVTRQLRYAAKDGDQGRSLDLVLFINGLPVATAELKNPLTGQNVNDAKHQYARDRD
PRELLFTKRTLVHFAVDPELVFLTTKLAGKSTRFLPFNTGSEGPGRTGGAGNPSPSPEQS
GYRTDYLWETVWNPDNWLDLLERFVHVKRDKDDKGRRRETVIFPRYHQWHAVRSLVDHAA
RHGAGNNYLVMHSAGSGKSNTIAWLAHRLSSLHTPADPALMDPAAVAKGLEPNTPVFDKT
VIITDRSVLDRQLQETVGDFSQVEGLVGRIGGKGGSKSSQLAEALSTSSKRIIVVTLQTF
PALLDYLRREPTEIRGGRFAIVVDEAHSSQSGEAAKDVKKALRDLGLDADDDSDDTAAEA
SPKSTEDALRESAAFRGRSANLSYFAFTATPKHKTLNLFGVRNEATDKYEPFHTYSMRQA
IEEGFILDPLRSYITYGTQYRLLNGNADDPEVDASKAKSELARFALLHDSTLAQHAETIV
ENFNAITRKQMGGRAKAMVVTRSREAALRLYEAVDSYLKDSGAPDPGALLAVSGSLKNKA
GEEVTEHSINGFSESELPKRFAATQADDPAAVARNGKEYRLLIVADKYQTGFDQPLLTTM
FVEKSLKGVAAVQTLSRLNRTHPLKSQSDLRVLDFVNDGEDIRASFLPYYEQAVTAEADP
DILHTIAHRVMHDVNVLVKEELQGFADAFHRLDADPGADDLRNHPELNRFTGAAVERFAA
LQNSEDGADRDDADLFRTDLNDYVTKYAFLSQVMRYPDAELERLYLYGRFLLRMLPARKD
GGVDLGDIDLSHLKLFRKAEDDLRLQAEGDQELPGFSDGAGGAQEAKKELLSEIIEIFNE
HFGHDLSEADRLMMEERFQTVMAQPGVEMAAVNNDEGAFRHAFEPAMKDAVMERYESGVE
FTERYFGEQDFQSSINRAMSRAAYRLLRQRNGLSTV
NT seq 3171 nt   +upstreamnt  +downstreamnt
atgagccctgtctacgacgagagaaccttcgaggaccacatcgtctcctccatgctggag
cgtggttggtcccagggcgccaatcaccactacgaccccgaactcgctctggacacggcg
gagctcaccgctttcctcggtgccacccaagctgacgtcttcgaggaactcgtcacccgc
tgtggcggctccatcgacaaagcccagaagaccttcgccaagaccctcgccaagcgcatc
gacaccgagggcaccctgcacgtcctgcgccaaggcgtgaccatcgagggcctgaggttc
cgcctcgcctacttcaagccctcgcacaccatcgccgagaacgccctcgctgagtacgag
gccaaccggctcaccgtcacccggcagctgcgctacgccgccaaggacggcgaccaggga
cgctccctggacctggtgctgttcatcaacggtctgcccgtcgccacggccgagctcaag
aacccgctcaccgggcagaacgtcaacgacgccaaacaccagtacgcccgagaccgtgac
ccgcgcgagctgctcttcaccaagcgcaccctggtgcacttcgccgtcgatcccgagctg
gtcttcctcaccaccaagctcgctggcaagagcacccggttcctgcccttcaacaccggc
tccgaaggtcccggccgtaccggcggcgcgggcaacccgtccccctcacccgagcagagc
ggctaccgcaccgactacctgtgggagacggtctggaaccccgacaactggctcgacctg
ctggagcgcttcgtccacgtcaagcgcgacaaggacgacaagggccgcaggcgcgagacc
gtcatcttcccccgctaccaccagtggcacgccgtgcgcagcctggtcgaccacgccgcc
cgccacggcgcggggaacaactacctggtgatgcactcggccgggtccggcaagtccaac
accatcgcctggctcgcccaccgcctgtcctccctgcacacccccgctgaccccgccctg
atggacccggccgccgtcgccaagggtctggagcccaacacccccgtcttcgataagacc
gtcatcatcaccgaccgctcggtcctggaccgccagctccaggagaccgtcggcgacttc
tcccaggtcgaagggctggtcgggcgtatcggcggtaagggtggctccaagtcctcccag
ctcgccgaggccctgtccacctcctccaagcgcatcatcgtcgtcaccctccagaccttc
cccgccctgctggactaccttcggcgcgaacccaccgagatccgcggcggccggttcgcg
atcgtcgtggacgaggcgcactcctcccagagtggtgaagcggccaaggacgtcaagaag
gcgctccgtgacctgggcctggacgccgacgacgattccgatgacaccgccgccgaggct
tcccccaagtccaccgaggacgcgctgcgcgagtcggcggccttccgaggccgcagcgcc
aacctgtcatacttcgccttcaccgccacccccaagcacaagaccctcaacctgttcggc
gtccgcaacgaggccactgacaagtacgagcccttccacacctactccatgcgccaggcc
atcgaggagggcttcatcctcgacccgctgcgcagctacatcacctacggcacccagtac
cggttgctcaacggcaacgccgatgaccccgaggtggacgcgagtaaggccaaatcggag
ttggcccggttcgcgttgctgcacgattccacactcgcccagcacgccgagaccatcgtg
gagaacttcaacgcgatcacccgcaagcagatgggtggacgggccaaggccatggtggtc
acccgctctcgggaggcagccttgcgcctgtacgaggccgtcgacagctacctcaaggac
agcggagcccccgaccccggtgccctcctcgcggtctccggctccctgaagaacaaagcg
ggtgaggaggtcaccgagcacagcatcaacggtttctccgagagcgagctgcccaagcgc
ttcgccgccacccaggccgacgacccggcggccgtggcccgtaacggcaaggagtaccgg
ctgctcatcgtcgcggacaagtaccagaccggtttcgaccagccgctgctgaccaccatg
ttcgtggagaagtccctcaagggcgtggcggccgtgcagaccctgtcccggctcaaccgc
acccaccccctcaagtcgcagagcgaccttcgggtactggacttcgtcaacgacggcgag
gacatcagggcctccttcctgccgtactacgagcaggcggtaaccgccgaagccgacccc
gacatcctgcacaccatcgcccaccgggtcatgcacgacgtgaacgtgctggtcaaggag
gagctccagggcttcgccgatgccttccaccgtctcgacgccgacccgggggccgacgac
ttgcgcaaccaccccgagctcaaccggttcaccggcgcggccgtggagcgcttcgccgcg
ctgcagaacagtgaggacggggcggaccgggacgacgccgacctgttccggacggacctg
aacgactacgtcaccaagtacgccttcctgtcccaggtgatgcgctacccggatgccgaa
ctggagcgcctctacctctacgggcgcttcctgctgcgcatgctccccgcccgcaaggac
ggcggggtggacctgggggatatcgacctcagtcacctgaaactgttccgcaaggccgag
gacgacctgcgactccaggcggagggggaccaggaactgcccggtttctccgacggagcg
ggcggtgcccaggaagcgaagaaggagctgctgtcggagatcatcgagatcttcaacgag
cactttggtcacgacctcagcgaggccgaccgactcatgatggaggagcgcttccagacg
gtcatggcccagcccggggtggagatggccgccgtcaacaacgacgagggcgccttccgg
cacgcgttcgaaccggcgatgaaggacgccgtgatggagcggtacgagagcggggtcgag
ttcaccgagcgctatttcggggagcaggacttccagagttccatcaaccgtgccatgagc
agggcggcctatcgtttgttgcgccaacgcaacggcctcagcaccgtctga

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