Nocardiopsis alba: B005_5140
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Entry
B005_5140 CDS
T02218
Name
(GenBank) RNA polymerase sigma factor, sigma-70 family protein
KO
K03090
RNA polymerase sigma-B factor
Organism
nal
Nocardiopsis alba
Brite
KEGG Orthology (KO) [BR:
nal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nal03021
]
B005_5140
Transcription machinery [BR:
nal03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
B005_5140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Sigma70_r4_2
UBAP-1_UBA2
HTH_23
Sigma70_ECF
HTH_31
DUF7343
DUF3700
Motif
Other DBs
NCBI-ProteinID:
AFR06397
UniProt:
J7L7F1
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All DBs
Position
5330390..5331247
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AA seq
285 aa
AA seq
DB search
MSATAPTREERASGGEAPREPSAEASAEELLSVLMELDQEDPLAVRLRERVMAHYGPLLN
RIAHRYRGRGEDVEDLRQTAHLGLAKAIRGYVPERGRAFISYLLPTVTGEIKRHFRDHTW
AVHTPRDPQSRRPRMRRARRELEQRLARTPSNAEIAREMGLEVKDVEEILLVSEAYNTLS
LDGPEPHGQDTSISWHRYLGVEDHELGLVVDRVSACSALRRLPSRERHILKRRFFDEWKQ
DRIAEEVGCSQMHVSRLLSGALSRLRRELTEEDPPPAGRPGRPRV
NT seq
858 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgccaccgcacccacgagggaagagcgcgcctccggtggcgaagcgccccgcgaa
ccttcggcggaggcctccgccgaggaactgctctccgtgttgatggagctggatcaggag
gatccgctggccgtgcgcctgcgtgagcgcgtcatggcgcactacgggccgctactgaac
cggatcgcccaccgttatcgaggtcggggcgaggacgtcgaggacctacgacagaccgcc
catctggggctggccaaggccattcgcggctacgttcccgagcggggcagggccttcatc
tcctaccttctgcccacggtcaccggggagatcaaacgccacttccgcgaccacacgtgg
gcggtccacaccccccgggacccccaatcccgccgaccccgtatgcgacgtgcgcggaga
gaactggaacagcggctggcccgcaccccgtccaacgccgagatcgcccgggagatggga
ctggaggtcaaggacgtcgaagagatcctcctggtctcggaggcctacaacacgctctcc
ctggacggccccgaaccccacgggcaggacacctccatctcctggcaccggtatctgggt
gtagaggaccacgaactcggcctcgtggtcgatcgtgtgtcggcgtgctccgccctgcgg
aggctcccctctcgagaacggcacatcctgaagcgccgtttcttcgacgagtggaaacag
gaccgtatcgccgaggaggtgggctgttcccagatgcacgtctcccggctcctctcgggg
gcgctgagcagactccgtcgagagttgaccgaggaggaccctccgcccgccggccgtccc
gggcgaccccgcgtatga
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