Nocardiopsis alba: B005_5536
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Entry
B005_5536 CDS
T02218
Name
(GenBank) RHS repeat-associated core domain protein
Organism
nal
Nocardiopsis alba
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHS_repeat
SpvB
TEN_YD-shell
Motif
Other DBs
NCBI-ProteinID:
AFR05876
UniProt:
J7KZC3
LinkDB
All DBs
Position
complement(5761760..5768206)
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AA seq
2148 aa
AA seq
DB search
MTALLMVGTLLQSVPASSTTFNVRPETEDEESVDGHDVEGAFVQASEALGDVVDAAVTAP
LTAAWPDPEVADVDLGDPGAGVPVGDGPVTVSQVSDEVLEEWAQELGVEGSEPEEASEGS
ESSEDPDVGPEVNTTESEDDEFSDEEGREQTPEGGEPLEEERVEENLTDQEDVLEETSPV
VASVDSIQVEVLGRERAEDAGVAGLLLELTRTDGETAAGPVDITVDYSDFAHAYGGDYGG
RLDIVAVDACSSEGDDACSEPSPQVTESDNDPLLQEVGATVLLAEGSTLIAVASDGEGDK
GDYKATDLSASSSWEVGLQTGDFSWSYPMDTPPVASDLTPSVELSYSSGSVDGRVSSSNN
QTSWIGEGFNYTPGFIERRYVPCAEKQSDSAKTGDLCWSHQNAIFSLNGRSGEMFQGEDG
TWRMRHDDASKIERLTGATNGDDDGEHWKITTTDGTQYYFGLNRLPGYRSGNPETNSTWT
VPVYGRDSGDPCNGSNFANSWCQQGWRWNLDYVVDPLGNAMTFYYAKERNHYGRNGQAGS
PTPYDRGGHPTRIEYGLRSDDLYATAPARVNFAVSERCIPTDSFDCDPDKFTSANARHWP
DAPFDQNCDSGQNCTNRLAPTFWSRKKLDSVTTQVHDGSSYQSIDSWTLDHSYPATGDGT
PPDLWLKSISHKGHVGDTETMPTLEFGGTQFENRVDARDDGFAPMLKWRITSILTESGSR
IDVGYASGECDPRDMPEPHANGTRCFPVINSTADGKSEYTDWFRKYVVTQVSEHDLVTDQ
PEDIVTYEYVGDAAWRFRDADGISREKQRTWSDWRGYELVRVTEGLSNQTRSQTEHRFFR
GMHGDKLPSGNRDVKVTDSEGGEHTDHNQYNGFKLEEATLNGPGGDVVEKTINLPWSRVT
GERRFSWGELQARMTGMASSTQFTAVDDGWTRTRETAEYDSLGRVTRVHDHGDLGDPDDD
QCVETTYADNTSLHILDAVSRTRRVAVGCDSEATVADVLSDTRSLFDGGGFGEAPTRGLA
TEEQRIEDHDGSTPVYQTVERSEHDDYGRTISETDPLGNTTTTTYASNTTGGNETSVTTT
NPLGHTETVLHDGGRGLPLTEIDANGNRTDFAYDPFGRLTEVWTPDKQRGQGGDPAMRFE
YHISNEEPSVVVTHTRRDDGTYVSGYQIYDGLLRERQSQDPAPGGGRVISETFRDSRGLE
VKERHAYHNEEDPGRSLFVVANEDSVPRYTETVYDGAERPTEVITFSRGREMWRTVSEDR
GDRQSVTPAEGAIPTTTIKDVRGQTVELRQHEGDGPDADYTALTYTYTPAGQLETVTDPA
GNVWRNHYDLRGRKIRTDDPDRGTTTFVYDDADRPVSTTDARGETVAHVYDELGRKTAQH
AGDTDGPLLASWTFDTVAKGELTRATRYVDGKEYTTSVGAYDSLGRATATSIGIPRDEDL
GGLSGTYRFRTTYNSDGTIRTNTYPAMGGLPEEIVSYGYNELGMPTRVRGLTEAESLYYV
NDTVYSKLGLVLQREFYRGDGSTSPKRTWSTRTYETSTNRMLSARVHHEIGHGSLVEQHY
SYDPAGNVLSIRDEPTAVEQSDVQCFDYDEMRRLISEWTSKDRGEDACASAPSPDNVGGA
SPYWYDYTYDALGNRTGETRHGVMTDSSVVNTFHRPEAGEARPHAVTERESSGDDNTSTY
SYDEAGNMVSRKTGHRDQTLEWDAEGQLVGVRDGTNKTSFVYDAEGERLLRDDGNTVTLY
LPGTEITYHKNDLVMNGTRFYEHNDEVVASRSATGQVHWIFSDHHKTGQLALDSVTGESI
RRRFTAFGIDRGTAGGTWPNSRGFVGGVVDEGIGLTRLGARSYDEELGSFISADPVIDFG
DSQQMHGFSYANNSPVSFTDPDGLFLRRTFARARAWAAQRARQAAIRAYRIRQAAIRAWR
IRQAAIRAHRIRQAAIRAARIRAAQARMARIRAAQRRAAAMRAAALRRAAAQRAARARAA
RIAAERRRQAAIRRSKVVGEGPRKLGPSNGREEAKPLGLYQGPLVHSGRPRKGLGGSGQI
DEGIGRSGSFGRQGGINSEQAREICTTRMEYRYRVIYGVGGIGVGGIIGGNLGGGIGAIA
GIVGGPPGVAAGAITGAFSGALSGAGIGYSAAADRGSVVGKIEAIRQC
NT seq
6447 nt
NT seq
+upstream
nt +downstream
nt
gtgacggcgcttctcatggtcggaacactgttgcagtccgttccggcctcctcgaccacc
ttcaacgtccgtcctgagacggaggacgaggagtcggtcgacggtcacgatgtcgagggg
gccttcgtccaggcctcggaggctctgggcgatgtggtcgacgccgccgtgacggcaccg
ttgaccgccgcgtggcccgacccggaggtggccgacgtcgatctcggggaccccggcgcg
ggggtccccgtgggcgatggtccggtcaccgtgtcccaggtgtcggacgaggtactggag
gagtgggctcaagagctcggtgtcgaagggagtgagccggaggaggcctccgaagggtcg
gagtcctctgaggacccggatgtcggccctgaggtgaacaccactgagagcgaggacgac
gagttctcggacgaagaaggtcgggagcagactccggaggggggcgagcctctcgaagag
gaacgggtagaagagaacctcacggaccaggaggatgtgctcgaagagacctccccggtc
gtggcgagcgtggattcgatccaggtcgaggtcctcggccgggaacgtgccgaagacgcg
ggcgtcgcggggctgttgctcgaactgacccggaccgacggagagaccgcggcggggccg
gtcgacatcaccgtcgactactccgacttcgcccatgcctacggtggggactacggaggc
cgtctggacatcgtggccgtcgacgcgtgttcctcggagggggacgacgcgtgttccgaa
ccctctcctcaggtgaccgagagcgataacgacccccttctgcaagaggtcggcgcgacg
gtactgctggccgaaggctcgacccttatcgcggtcgcctcggatggcgagggggacaag
ggcgactacaaggcgaccgacctctccgcctcctccagttgggaggtggggctccagaca
ggggacttctcctggagttacccgatggacacaccgccggtcgcgagcgacctcacaccc
agtgtcgagctgtcgtactcgtcggggtcggtcgatggtcgggtctcctcgtccaataac
cagacctcctggatcggtgaggggttcaactacacccctggcttcatcgagcgtagatat
gtcccctgtgcggagaaacagtcggattcggcgaagaccggggatctctgctggtcgcat
cagaacgcgatcttctccctgaacggtcgctccggcgagatgttccagggcgaggacggc
acgtggcggatgcgccatgacgacgcctcgaagatcgaacgtctcaccggtgccaccaac
ggcgacgacgacggtgaacactggaagatcaccactacggacggcactcagtactacttc
gggttgaaccgactgcccggataccggagtggaaacccggagacgaactccacctggacc
gttccggtgtacggacgggactcgggagacccctgcaacgggtcgaacttcgcgaattcc
tggtgccagcagggatggaggtggaacctcgactacgtggtcgaccccctcggtaacgcc
atgacgttctactacgccaaggaacgcaaccattacggtcgtaacgggcaggcgggctcg
cccacgccctacgatcgtggtggccatcccacgcgtatcgagtacggcctgcgttcggac
gacctgtacgcgacggccccggcccgagtaaacttcgccgtcagcgagcgctgcatcccc
accgactccttcgactgcgatccggacaagttcaccagtgccaacgcccgccactggccg
gacgctcctttcgaccagaactgcgactccgggcagaactgcaccaacaggctcgccccc
accttctggtccaggaagaaactggattccgtcaccacacaggtccacgacggctcctcc
taccagagcatcgactcttggacactggaccacagctatccggcgaccggcgatgggacc
ccgcctgacctgtggctcaagtcgatcagccacaaggggcatgtcggagacaccgagacg
atgccgaccctggaattcggcggaacccagttcgagaaccgtgtcgacgcgcgagacgac
ggcttcgcccccatgttgaagtggcgtatcacctcgatcctgaccgagagcggctcgcgg
atcgacgtcggctacgcctccggtgagtgcgatccgcgggacatgccggaaccacatgcg
aacggcacgcgctgcttccccgtcatcaactccactgcggacggcaagagcgagtacacg
gactggttccgtaagtacgtggtgacccaggtcagtgaacacgacctggtcaccgaccag
cccgaggacatcgtgacgtatgagtacgtcggtgacgccgcctggcgctttcgggatgcc
gacgggatcagccgggagaagcagcggacctggtccgactggcgcggctacgaactggta
cgcgtcaccgaagggctctcgaaccagacccgctcccagaccgagcatcggttcttccga
gggatgcacggagacaagctgccgagcggtaaccgtgacgtcaaggtcacggactcggaa
ggcggagagcacaccgaccacaatcagtacaacgggttcaagctcgaagaggccaccctc
aacgggcctggtggagacgtggtcgagaagaccatcaatctgccgtggagccgggtcacc
ggtgagcgccgcttctcctggggcgaactccaggcacgtatgacgggtatggcctccagc
acccagttcaccgccgtcgacgacgggtggacgcgtacccgtgagacggccgagtacgac
tccctgggcagggtcacccgagtccatgaccatggtgatctgggagatcccgacgacgac
cagtgtgtcgagaccacctacgcggacaacacctccctgcacatcctggacgcggtgtcc
cgtacccgcagggtcgccgtcggctgtgattccgaggccaccgtcgccgacgttctgagc
gacacgaggagcctcttcgacggaggaggtttcggagaggcgcccacacgcgggctggcc
accgaggaacagaggatcgaggaccacgacggttccacccccgtctatcagacggtggaa
cggagcgaacacgacgattacggtcgtacgatctccgaaaccgaccctctcgggaacacg
accacgacgacctacgcgtcgaacaccaccggtggtaacgagaccagtgtcacgaccacc
aacccgctcggacatacggagacggtgcttcacgatggcggtcgtggacttccgctcacc
gagatcgacgccaacggtaatcggaccgacttcgcctacgatcccttcgggcgtctgacc
gaggtatggacccccgataaacaacggggccagggcggagaccccgccatgaggttcgaa
taccacatcagcaacgaggaaccctccgtcgtcgtgacacatactcgacgtgacgacggg
acgtacgtctccgggtaccagatctacgatggcctgttgcgcgagcgtcagagccaggac
cccgcgcccggtggcggccgtgtcatctcggagaccttccgggacagccgagggctcgag
gtgaaggaacggcacgcctatcacaatgaggaggatcccggacgctctctgttcgtggtc
gccaacgaggacagtgtcccccgctacaccgaaacggtgtacgacggtgccgaacggccc
accgaggtgatcaccttctcccgtgggcgagagatgtggcggaccgtctcggaggaccgc
ggggaccgtcaatcggtcaccccggccgaaggcgccatccccaccaccacgatcaaggac
gttcgcggccagaccgtggagctccgtcagcacgagggcgacggtccggacgcggactac
acagcgctgacctatacctacacacccgccggtcagctcgaaaccgtgaccgacccggcc
ggaaacgtctggcgtaaccactacgacctgcgcgggcgtaagatccgcaccgacgatccg
gatcgtggtaccaccaccttcgtctacgacgacgcggaccgccccgtctcgaccaccgac
gcgcgcggtgagacggtcgcccacgtctacgacgagctgggacgcaagaccgcccagcac
gcgggggacaccgacggccccctcctggcctcttggaccttcgacacggtcgcgaaggga
gaactgacccgggccacccgctacgtggacgggaaggagtacacgacctccgtcggcgcc
tacgactcgctggggcgcgcgaccgcgacgtcgatcggcatcccccgggacgaggacctc
ggcgggttgagcggtacctaccgcttccggaccacctacaactccgatgggaccattcgg
accaacacctatccggcgatgggcggtctccccgaagagatcgtcagctatggctacaac
gagttgggcatgcccacccgtgtccgagggctgaccgaggcggagtcgctctattacgtc
aacgacaccgtgtactccaagctggggctggtgctccaacgggagttctaccgcggagac
ggttccacctcgcccaagaggacctggtcgacccggacctatgagacgtccaccaaccgg
atgctcagtgcccgagtgcaccacgagatcggtcacggcagtctggtcgagcagcactac
tcctatgacccggccgggaacgtcctgagcatcagagacgaacccaccgcggtcgagcag
agcgacgtacagtgcttcgactacgacgagatgcggcgtctgatcagtgaatggacgtcc
aaggacaggggagaggatgcctgtgcctccgccccctctccggacaacgtgggcggcgcg
tcaccctactggtacgactacacctatgacgctctggggaaccggaccggcgagacccgg
cacggggtcatgaccgactccagcgtcgtcaataccttccaccgtcccgaagccggagag
gcccgcccccacgcggtcaccgagcgagagagcagcggcgacgacaacacctccacctac
tcctacgacgaggccgggaacatggtctcccggaagacgggccaccgtgaccagaccctg
gagtgggacgccgaaggtcagctggtcggggtccgggacgggacgaacaagacctcgttc
gtctacgacgccgaaggagaacgactcctccgggacgacgggaacacggtgaccctctac
ctccccggtacggagatcacctatcacaagaacgacctcgtgatgaacggcacgcggttc
tacgagcacaacgacgaggtcgttgccagccgctccgcgacgggtcaggtgcattggatc
ttctccgatcaccacaagacggggcagctcgccctggactcggtcacaggcgagtcgatt
cgacgtcggttcaccgctttcggtatcgaccggggcacggccggcggcacctggcccaac
tcgcgcggcttcgtcggaggggtcgtcgatgaggggatcgggttgacccgtttgggcgca
cggtcctacgacgaggaactcggttcgttcatctccgcggacccggtcatcgactttggt
gactcccagcagatgcacgggttctcctacgccaacaacagccctgtgtccttcaccgac
ccggacggtctgttcctgcgcaggaccttcgcccgagcccgcgcgtgggccgctcagcgc
gcgcgtcaggccgcgatccgcgcctaccgtattcgccaggcggcgatccgtgcctggcgt
atccgtcaagcggcgatccgcgcccaccgcattcgccaggccgcgatccgcgcggctcgc
atccgcgcggcccaggcgcgtatggcccgtatccgagcggcacagcgcagggccgcggcg
atgagagcggccgccctacgcagggccgcggctcagagagcggcacgcgctcgagccgcc
cgcatcgcggcggaaaggcgccgacaggccgccatacgccgttccaaagtagttggggaa
gggcctcggaagttgggtccttccaacggtcgagaagaagccaaaccactgggcctctac
caaggtccactggtgcactctggaaggccaagaaagggattgggaggtagcggccagata
gatgaggggattggccgttcggggagttttgggcgacaaggcggtattaattcagagcag
gctagagaaatatgtaccaccagaatggaatataggtatagggttatttatggagtgggt
ggaattggggttggtggtataattggtggaaacttggggggtgggatcggtgcgattgca
ggtatcgtaggtggcccgcccggagttgctgcgggtgctatcactggagcttttagtggg
gctttgagtggggcaggtatagggtattcagcggctgctgaccgaggaagtgtggtgggc
aagatagaagcaatcaggcaatgctga
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integrated database retrieval system
