Nocardiopsis alba: B005_5586
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Entry
B005_5586 CDS
T02218
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
nal
Nocardiopsis alba
Pathway
nal03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
B005_5586
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nal03400
]
B005_5586
DNA repair and recombination proteins [BR:
nal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
B005_5586
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
B005_5586
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_DNA-bind
UvrA_inter
ABC_tran
SMC_N
AAA_21
AAA_29
APS_kinase
nSTAND1
AAA_16
RsgA_GTPase
AAA_22
AAA_25
DnaJ_CXXCXGXG
AAA_23
nSTAND3
NACHT
ATPase
cobW
Viral_helicase1
ScfRs
Motif
Other DBs
NCBI-ProteinID:
AFR08487
UniProt:
J7LD92
LinkDB
All DBs
Position
complement(5820808..5823642)
Genome browser
AA seq
944 aa
AA seq
DB search
MVEQLVVRGAREHNLKDVSLDLPRDSMIVFTGLSGSGKSSLAFDTIFAEGQRRYVESLSA
YARQFLGQMDKPDVDFIEGLSPAVSIDQKSTSRNPRSTVGTITEVYDYLRLLWARVGVPH
CPECHREIARQSPQQIVDRVMEMTEGTRFQVLAPVVRGRKGEYVELFKELQSKGYTRAVV
DGEAVRLDEAPKLGRYDKHDIAVVVDRLSVKPGSPGRLTDSIETALKLAGGTIVLDFVDL
DAEDPEREKVFSEHLYCPYDDLSFEQLEPRSFSFNAPYGACPDCSGLGTRMEVDADLLVP
DPEKTLAEGAISPWSGGPNSGYWERILTALGEAIGFDLDTPWERLPRKARKAILEGHGTQ
VHVSYRNRYGRSRSYYTEFEGVVPWVRRRHSEVESDHTRERLEGYMRTVPCPTCEGTRLK
PVVLAVTVGGRSIADVASMSLRDSAAFLADLTLSDRDMVIASQVLKEINARLGFLLDVGL
DYLSLARSSGSLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNARLLETLQRLR
DIGNTLIVVEHDEDTIRAADWVVDIGPGAGEHGGHVVVSGIVDELLTSTDSLTGDYLSGR
RAIELPKLRRPVTKGHELVVRGARENNLDGIDVTFPLGVFTAVTGVSGSGKSTLVNEILY
KALAKELNGARDVPGRHLRVNGTGKVDKVVHVDQSPIGRTPRSNPATYSGVFDHVRKLFA
QTTDAKTRGYQPGRFSFNVKGGRCEACAGDGTLKIEMQFLPDVYVPCEVCHGARYNRETL
QVKYKGKNISEVLDMPISEALEFFEPINAIRRHLQTLSDVGLGYVRLGQPATTLSGGEAQ
RVKLAAELQRRSTGRTVYVLDEPTTGLHFEDIRKLLGVLDRLTESGNTVIVIEHNLDVIK
TADHVIDMGPEGGSGGGMVVAQGTPEEVAAVAESYTGRFLAKML
NT seq
2835 nt
NT seq
+upstream
nt +downstream
nt
atggtcgaacaactggtggtgcgtggagcacgggagcacaacctcaaggacgtgtccctg
gatctgccacgcgactccatgatcgtgttcaccgggctgtccggatcgggcaagtcctcg
ctcgccttcgacacgatcttcgccgagggccagcgccgctacgtcgagtccctctcggcg
tacgcccgccagttcctcggccagatggacaaacccgacgtcgacttcatcgagggcctc
tcgcccgcggtctccatcgatcagaagtcgaccagccgcaacccgcgttccacggtcggg
accatcaccgaggtctacgactacctgcgcctgctctgggccagggtgggcgtgccgcac
tgccccgagtgccaccgcgagatcgcccggcagagcccgcagcagatcgtcgaccgggtc
atggagatgaccgagggcacccgtttccaggtgctggcccccgtcgtgcgcggccgcaag
ggcgagtacgtcgaactcttcaaggaactccagtccaagggctacacccgcgcggtggtc
gacggcgaggcggtgcggctggacgaggcgcccaagctgggccgctacgacaagcacgac
atcgcggtggtcgtggatcggctcagcgtcaagcccggctccccgggccggctcaccgac
tcgatcgagacggcgctgaagctggccggcggcacgatcgtgctggacttcgtcgacctg
gacgccgaggaccccgagcgcgagaaggtcttctccgagcacctgtactgcccctacgac
gacctctccttcgaacaactcgaaccgcgctccttctccttcaacgccccctacggcgcc
tgccccgactgctccggtctgggcacccgcatggaggtcgacgccgacctgctggtcccc
gacccggagaagaccctggccgaaggggcgatctcgccctggtcgggcgggcccaacagc
ggctactgggagcggatcctcacggcgttgggcgaggcgatcggcttcgacctggacacc
ccctgggagcgtctgccccgcaaggcgcgcaaggccatcctggaggggcacggcacccag
gtgcacgtcagctaccgcaaccggtacgggcgcagccgctcctactacaccgagttcgag
ggggtcgttccctgggtgcggcgccgccactccgaggtggagagcgaccacacgcgcgag
cgcctcgagggctacatgcgcacggtgccctgccccacctgtgaggggacccggctcaag
ccggtggtgctggccgtgaccgtgggcggtcgctcgatcgccgacgtcgcgtcgatgtcg
ctgcgggacagcgccgccttcctcgccgacctgacgctctccgaccgggacatggtcatc
gcctcccaggtgctcaaggagatcaacgcccggctggggttcctgctggacgtgggtctg
gactacctgagcctggcgcgttcgtccggttcgctctcgggcggcgaggcccagcgcatc
cggttggccacccagatcggttcggggctggtgggcgtcctctacgtgctggacgagccc
tccatcgggctgcaccagcgcgacaacgcccgcctgttggagacgctccagcggctgcgc
gacatcggtaacacgctcatcgtggtcgaacacgacgaggacaccatccgcgccgccgac
tgggtcgtggacatcggccccggcgcgggcgagcacggcggccacgtcgtggtctcgggc
atcgtcgacgagctgctcacctcgaccgactcgctgaccggcgactatctgtcggggcgg
cgcgccatcgagctgcccaagctgaggcggccggtcaccaagggccatgaactggtggtc
cgaggggcgcgggagaacaacctggacgggatcgacgtgaccttcccgctcggggtgttc
accgcggtcaccggtgtgtccggttcgggtaagtccaccctggtcaacgagatcctgtac
aaggccctggccaaggagctcaacggcgcccgcgacgtgcccggtcggcatctgcgggtc
aacggcaccggcaaggtcgacaaggtggtgcacgtcgatcagagcccgatcggtcgtacc
ccgcgttccaacccggccacctactccggggtcttcgaccacgtgcgcaagctgttcgcg
cagaccaccgacgccaagacccgcggctaccagccgggccggttctccttcaacgtcaag
ggcggccgttgcgaggcctgcgcgggcgacggcacgctcaagatcgagatgcagttcctg
cccgacgtgtacgtgccctgcgaggtctgccacggagcccggtacaaccgggagaccctt
caggtgaagtacaagggcaagaacatctccgaggtgttggacatgcccatctccgaggcc
ctggagttcttcgagccgatcaacgcgatccgccgccacctccagacgctcagcgacgtg
gggttgggctacgtgcggttggggcagccggccacgaccctgtcgggcggtgaggcccag
cgggtcaagctcgccgcggagcttcagcgccgttccaccgggcgcaccgtgtacgtgctg
gacgagccgaccacgggtctgcacttcgaggacatccgcaagctgttgggcgtgctcgac
cggctgaccgagagcggcaacacggtgatcgtcatcgagcacaacctcgacgtcatcaag
accgccgaccacgtcatcgacatgggccccgagggcggttccggcggtggcatggtcgtg
gcccaggggaccccggaggaggtcgccgcggtcgcggagtcctacaccggtcgtttcctc
gccaagatgctctga
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