Candidatus Nitrospira allomarina: PP769_02465
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Entry
PP769_02465 CDS
T09427
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
nall
Candidatus Nitrospira allomarina
Pathway
nall03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nall00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PP769_02465 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nall03019
]
PP769_02465 (recQ)
03400 DNA repair and recombination proteins [BR:
nall03400
]
PP769_02465 (recQ)
Enzymes [BR:
nall01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PP769_02465 (recQ)
Messenger RNA biogenesis [BR:
nall03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PP769_02465 (recQ)
DNA repair and recombination proteins [BR:
nall03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PP769_02465 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
HTH_40
RecQ_Zn_bind
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
WNM58651
UniProt:
A0AA96JX60
LinkDB
All DBs
Position
580262..582697
Genome browser
AA seq
811 aa
AA seq
DB search
MKNNLPPQHINSRHLHPSTQPHLLSLLKEHFGFTAFRPLQEEIIRDVLAERDVVALLPTG
GGKSLCFQLPALARSGLTIVVSPLIALMKDQVDGLRANGIAATYLNSSLTAQESQIRLRG
LHQGDYRLLYMAPERLMVPGYLSLVRNFQVNLLAIDEAHCISEWGHDFRPEYRRLVELRD
QVPSLPIIALTATATERVQKDIVTLLRLRDPACYVASFNRPNLTYQVQPKDNPFGQVLAF
LRKRPKDSGILYCQSRKTTESVADRLQQYGLKALPYHAGLSAEERTRNQELFLRDEIQVI
CATIAFGMGINKPNVRFVIHYDLPKNLESYYQETGRAGRDGLPSECVLLFSAGDTVKQQR
FINEKTNFQEQQIADRQLQEMVHYAECSTCRRRTLLQYFGEQVESENCEACDNCLTPRDI
FDGTDAAQTVLSCVEEIRGTSGFSVGLNHVIAVLTGANTEKIRRWRHDLLTSYGKGEAHR
RPEWAAISRELIRLGYLRQSADPFTVVEVTDQGQVFLQDPKTLMLTKPMSTPERKALSGE
DPGHDEMLFTRLRQLRKTLADEADVPAYVIFSDVALRQMARDYPANEQEFLQISGVGNRK
LQEFGPKFLAVIARHLENYAPLTIPKEPNPASALSLRNQNPANNKKNIECRQDLETYEEP
DSSKNSTISPALSHGQGRRGMGTRSAKELREDDRAPKTPAANFFNRPARRRPLGDTVHDT
LRYFRSGHSIEQIASERGLVVSTIYGHMEQAIQAGEPVDLTRLWTSEQELEMAEAFGKTG
FGNLTGAKELLGNLYDYGQLRLFRAVYGKNG
NT seq
2436 nt
NT seq
+upstream
nt +downstream
nt
gtgaagaacaacctaccccctcaacatattaactcccggcacctgcacccctcaacacaa
cctcacctcctctcactgttaaaagaacattttggtttcacggcctttcggcctttacag
gaagagatcattcgggatgtactcgctgagcgcgacgtggtggccctgttacccacggga
ggagggaagtccctgtgctttcagttaccggcgctggcccgctcgggcctgacgatcgtg
gtctcgccgctcattgcgctgatgaaagatcaagtggatgggctccgtgccaatggcatt
gctgcaacatatctcaactcatctctgaccgcgcaggaatcccagattcgcttgcggggg
ctgcaccagggtgactaccgcctcctctacatggcaccggaacgcctcatggttcccgga
tacctcagcctggtcaggaattttcaggtcaatctgctggctattgatgaagcccactgt
attagtgaatggggccatgatttccggccggaataccggcgacttgtggaactccgggat
caggtccccagtctcccgatcatcgcactcaccgctaccgccacggagcgggtgcaaaaa
gacattgtcacacttctacgattgcgggacccggcctgctacgtggccagtttcaaccgg
cccaacctgacctaccaggtgcagccaaaggacaatccgtttggacaagtcctcgcattt
ctccggaaacgcccaaaggactcaggaattctctactgccagagccggaagaccacagaa
agtgtggcggatcgtttacagcaatatggcctgaaggcactgccctatcatgccggactg
agtgccgaggagcggacccggaatcaggaattgttccttcgagatgaaatccaggtgatt
tgcgccaccattgccttcggcatgggaatcaacaagcctaacgtgcgatttgtcattcac
tacgatttacccaaaaacctcgaaagctattatcaagagaccgggcgtgccggacgagat
ggcctgccaagcgagtgtgtcctgctcttcagcgccggggatacggtcaagcagcaacgc
ttcatcaatgagaaaactaacttccaggagcagcagatcgccgacaggcaattacaggaa
atggtgcactatgcggaatgttctacctgccggcgccgcacattgctccaatattttgga
gaacaggttgaatccgaaaactgtgaggcatgtgataactgcctgacgcccagggatatc
ttcgacggcacggatgccgcgcagaccgttctctcttgcgttgaagaaatacgtggaaca
agtggatttagcgtcgggctcaatcacgtcatcgccgtactcaccggagccaacaccgaa
aaaatccgacgatggcgtcatgacctattaaccagctacgggaaaggagaagcccaccgg
aggccagaatgggccgccatcagccgggaactcatccggctgggatatctccgacaatcg
gcagacccattcaccgtggtggaggtcaccgaccagggtcaggtttttcttcaagacccc
aaaacgctcatgctcacaaagcccatgagcacaccggaacgcaaggcgctctctggcgag
gaccctggtcacgatgagatgctcttcactcgcctccgtcaacttcgcaaaacattagct
gatgaggctgatgtccctgcctacgtcatattttccgatgtggcactacggcagatggca
cgtgactatccggctaatgaacaggaattcctccagattagcggagtcggaaatcggaaa
ttacaggaatttgggcctaagttcctggcagtcatcgcaagacacctggaaaactacgct
cccctgacaattccaaaggaacccaatcccgcttcagcactctctttaaggaatcaaaac
ccggcaaacaataaaaaaaatattgagtgccggcaggatttggagacttatgaagaaccg
gacagttcaaaaaattccacaatttcacccgccctttcccacgggcaaggccgcagggga
atgggcaccaggagcgcaaaagaattacgggaggacgacagggccccgaaaacgccggcg
gcgaactttttcaacaggccggccagaagaaggccgcttggagataccgtccatgatacg
ttgcgctattttaggtctgggcattcgatcgaacagatcgccagtgagcgcggcttggtc
gtcagcaccatctatggacacatggaacaagccatccaagccggtgaaccggtagacctt
acccgactgtggacatcggagcaggaattagaaatggcagaagccttcgggaaaacgggg
tttggcaatctcaccggagccaaagagctactcggtaatctctacgattacggccaactt
cggctcttccgcgccgtttatgggaaaaatgggtag
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