Candidatus Nitrospira allomarina: PP769_05040
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Entry
PP769_05040 CDS
T09427
Symbol
uvrA
Name
(GenBank) excinuclease ABC subunit UvrA
KO
K03701
excinuclease ABC subunit A
Organism
nall
Candidatus Nitrospira allomarina
Pathway
nall03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nall00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PP769_05040 (uvrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nall03400
]
PP769_05040 (uvrA)
DNA repair and recombination proteins [BR:
nall03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PP769_05040 (uvrA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PP769_05040 (uvrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
ABC_tran
SMC_N
AAA_16
AAA_29
AAA_23
nSTAND1
AAA_21
AAA_25
DnaJ_CXXCXGXG
RsgA_GTPase
nSTAND3
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
WNM59132
UniProt:
A0AA96GD37
LinkDB
All DBs
Position
1158107..1160641
Genome browser
AA seq
844 aa
AA seq
DB search
MIYSASMNNSIVIRGARQHNLKNLDLEIPRDQLVVITGLSGSGKSSLAFDTIYAEGQRRY
VESLSAYARQFLDQMTKPDVDSIEGLSPAISIEQKTTSHNPRSTVGTVTEIYDYFRLLFA
RIGQPFCYLCGNAIAAQTVQQMVDAIIGLPLGTKIHILAPIVRGRKGEYRKELLAARKAG
FVRARIDGNIRDLGESINLHKQRKHSIEIVVDRLIVKPEIGVTRRLADSVETALKMAQGL
VGVLTEDDQVRVYSEHLACIQCGVSYSEVSPRIFSFNSPHGACEGCDGIGYEASSHSEWE
EWTFDTPCAMCGGGRLRKESLAIKIGGQSIAEVTHLSVGNILAFMDALILTDREQMIGQR
VLKEIRERLEFLLNVGLGYLTLDRPSATLSGGEGQRIRLATQIGSGLVGVLYILDEPSIG
LHQRDHRRLLQTLLRLRDMGNSVVVVEHDAETMRAADYILDLGPGAGVEGGQLVAHGPPS
AVMAHPGSLTGQYLKGSRRVSLIQRARQVKGFLTVVGAKKHNLQHVTVNFPLGLLTCVTG
VSGSGKSTLVVDVLFRSLGQGFSQKKPVFEGCRDIRGLEQLDKLIDIDQSPIGRTPRSNP
ATYTGLFSFIRDLFAQLPESRVRGYKPGRYSFNVKGGRCEACQGDGLIKIEMHFLPDIYV
TCEACNGQRYNRETLDVTYRGRTIAEVLNMTVAEALEFFMNIPPLRTRLQTLSDVGLHYI
KLGQSATTLSGGEAQRVKLSKELSKRSTGRTLYILDEPTTGLHFVDIQRLLDVLDRLVEA
GNTVLVIEHNVDVIQNADWVIDLGPEGGDQGGCVVAEGTPQSVMKVKASWTGQVLLEDFK
NRSS
NT seq
2535 nt
NT seq
+upstream
nt +downstream
nt
atgatatactcggcttccatgaacaactctatcgtgattaggggcgctcgccagcataat
ctcaagaatctcgacctggagatacctcgggatcagttggtggtcattacggggttaagc
ggatcaggtaagtcatctttggcctttgacacgatttatgccgaaggccagcgtcgatat
gtcgaatcactctccgcctatgcccggcaattccttgaccaaatgacgaaaccggatgtg
gattccattgaagggctttcgcctgccatttccatcgaacaaaagacgacgagtcacaac
cctcgatccacggtggggacggtcacggagatctacgattattttcgtctactatttgcc
agaatcggacaacccttttgctatctttgtggaaatgccattgcggcgcaaacggtacaa
caaatggtggatgccataatcgggcttcctcttggcaccaaaatccacatattggctccc
attgtgcgaggacgtaaaggcgaatatcgcaaagaactactggcagctcgcaaagctgga
tttgttcgggctcgtattgatggaaacattcgggatctcggggagtcaattaatttacat
aaacaacgtaagcattccattgagattgtggttgatcgactcatcgtcaagccagagatc
ggggtgactcggcgtttggctgattcggtagaaacggccctcaagatggcgcaaggactc
gttggagtgctgacagaagatgatcaagtccgggtctatagtgaacacctggcgtgtatt
cagtgtggtgtcagctattccgaagtttccccaagaattttttcatttaacagccctcac
ggtgcgtgtgagggatgtgatggtattgggtatgaagcttccagtcattctgaatgggag
gaatggaccttcgataccccctgtgcgatgtgtggcgggggtcgcctgagaaaggaaagc
cttgccataaaaattggggggcagtctattgctgaggtgacccatctgtctgtggggaat
atcctggcatttatggatgcgttaattctcaccgatcgcgaacagatgattgggcagcgg
gtgctgaaagagattcgggagaggctggagtttttgctcaacgtcggattgggctacctc
accctggatcgcccttctgccactttgtccggaggggaagggcaacggattcgattagcc
acacaaatcggatcgggattggtgggcgtgctatatatcctggatgaacccagtatcgga
ttgcatcagcgggatcaccgacggttactccaaacattgttacgattgcgtgatatgggg
aattccgtggtggtggttgagcacgatgccgagaccatgcgcgccgcggactatatattg
gatttagggccgggagccggtgtggaaggtggacaattagttgctcatggtcctccctcg
gcggtgatggctcatccaggctcgctgaccggtcaatatctcaaagggagccgccgcgtg
tccttgatccaacgtgcacggcaggtcaaaggatttttgaccgtcgtgggtgcgaaaaag
cacaatcttcagcacgtgactgtaaactttccattgggcctgttgacctgtgttaccggt
gtgtcagggtcagggaaaagtactctggtcgtagatgtgttgttccgatccctgggacag
ggtttttcacagaagaaaccggtgtttgaggggtgtcgagacatacgtggacttgagcag
ctggataaactgattgatattgatcagtccccaattggacggactcctcgttcgaatccc
gccacttataccggcctctttagtttcattcgtgatcttttcgcacaattacctgagtct
cgagtgcgaggctacaagccaggccgctacagtttcaatgtcaagggtggacgctgtgaa
gcttgtcagggtgatggcctcataaaaattgaaatgcattttctcccggatatttatgtg
acctgtgaggcctgcaatggtcaacggtacaatcgcgaaaccttagatgtgacctacagg
ggccgaacgattgcagaagtcttaaacatgaccgtggctgaggccctggagtttttcatg
aacattccgccacttcgaacccgactgcaaaccttatcagatgtgggcctccattacatt
aaactcgggcaatcggcgactaccttgtcagggggcgaagcccagcgtgtcaagctttcc
aaggagctctcgaaacgatccactggccgtacgctttatattctggacgaaccgacgacg
ggactgcattttgtggatattcagcggttgttggatgtactggaccggttagtggaagcc
ggaaatacggtccttgtgattgagcataatgtggatgtgattcagaacgcggactgggtc
attgatttggggccggaaggtggagatcaaggaggatgtgtggtggcggagggcacaccc
caatcggtgatgaaggtcaaagcatcctggacagggcaggtgctgctagaagattttaaa
aaccggtcttcctga
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