Candidatus Nitrospira allomarina: PP769_15640
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Entry
PP769_15640 CDS
T09427
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
nall
Candidatus Nitrospira allomarina
Pathway
nall03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nall00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PP769_15640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nall03019
]
PP769_15640
03009 Ribosome biogenesis [BR:
nall03009
]
PP769_15640
Enzymes [BR:
nall01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PP769_15640
Messenger RNA biogenesis [BR:
nall03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PP769_15640
Ribosome biogenesis [BR:
nall03009
]
Prokaryotic type
rRNA helicases
PP769_15640
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
WSD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WNM57386
UniProt:
A0AA96GGQ0
LinkDB
All DBs
Position
3528435..3530195
Genome browser
AA seq
586 aa
AA seq
DB search
MKHDASNSPTAPTMKGFSPGFAALGLEAALLTTLEALGYEEPTPIQREAIPPLLAGNDLL
GRAATGTGKTAAFTLPLLQRLAHSPKQPHPSALILVPTRELAIQVCEAVQRYGKQQAIAI
LAVYGGQAIRPQLIALKRGVDIVVATPGRALDHIRRKTLHLKDLQIVVLDEADEMLNMGF
AEDLDAILKQTPTTRQTALFSATMPPRIASIARHHLRNPIEIQIIKEPVKAGVAPRVHQT
AYLVARPHKVAALARILDMSSPKSALVFCRTRLEVDELTSMLNGRGYRGEGLHGGMNQAQ
RDRVMQSFRAGKTELLVATDVAARGLDIPHVSHVVNYDVPSSPEAYVHRIGRTGRAGRAG
EAITLVESRERWLLQNIERLTKSKVEMGTLPTGADLQAKRLEQIGVSIQEILKTNDFEQF
RAVVNTLTEKYDPADVAAAALQLAYGSKTGNRVEEDIPAIRDRTPDTSQTARRPRRGSSD
FPDSGRAFRGGGGGGRPSVRRERHSQSTSMATLHVNAGRMAGVRTGDLVGAIANEAGIHS
NVIGPIKVSDQFSLVKVPEEHVHGIIKALGRTRIKGQKVTIRLYKE
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atgaaacacgatgcctccaactcacccacggctccaacgatgaagggcttttcacccggc
tttgccgctctcggccttgaggcggcgctgctgaccacgcttgaagcattaggatatgaa
gagcccacccccattcaacgcgaagccattcctccgctattggcgggaaacgaccttctg
gggcgggccgcaaccggaactggaaaaactgctgcattcacgcttcccctgctccagcgt
cttgcccattcgcccaagcagccacatccttcagcccttattctcgtgcccacccgcgaa
ttggccatacaagtttgcgaggctgtgcagcgttatgggaagcagcaggccatcgccatc
ctcgcggtttatggaggtcaagccatccgaccccagctcatcgcgttgaaacgcggagtg
gatatcgtcgtggcgacgccaggacgggcactggaccatatacggcgtaaaacccttcat
ctcaaggacctgcagattgtggtgctggatgaagctgatgagatgctgaatatggggttc
gcggaagatctggatgccattctgaaacaaaccccgacgaccaggcagaccgcactgttt
tcagcaaccatgcctccacgcatcgcatcaatcgcccgacatcatctgcgcaaccccatc
gagattcagatcatcaaggaaccggtaaaggccggtgtggcccctcgggtgcaccagacg
gcctaccttgtggccaggccacataaagtggcggccctggccagaatcctggatatgtcc
agtccaaagtccgccttggtgttttgccgaacacgattggaagtcgatgagctgacctcc
atgctcaacggccgcggataccggggagaaggcctgcatggcgggatgaaccaggctcaa
cgggatcgggtgatgcaatcgttccgtgccgggaaaaccgagctgcttgttgcaaccgac
gtggcggcccggggtctggatattcctcacgtatcacacgtagtgaattacgatgtcccg
tcctctcccgaagcctacgtccatcgtatcggacgaaccggacgcgcaggacgcgccggt
gaagctattacccttgtggaatcccgggaacgctggctgctgcaaaatatagaacgcttg
accaaatccaaagtcgagatgggcaccctcccgacgggggccgaccttcaagctaagcgc
cttgaacagattggcgtttccattcaagagattctcaagaccaacgactttgagcaattc
cgagccgtggtcaacaccctcaccgaaaaatatgaccccgcggatgtcgccgcagccgcc
cttcaattggcctatgggtcaaagacaggtaatcgggttgaagaggatattcctgcaata
cgggaccggacacctgacacatcccagacggccagacggccaaggcgagggtcatcggat
ttccccgattccggaagggctttcaggggaggaggaggcggtggtaggccctccgtcagg
cgggaacggcacagtcaatctacaagcatggcgaccttgcatgtgaacgccggtcgaatg
gccggggtccgcacaggggatctggtcggtgccatcgccaatgaggccggaattcattcg
aatgtgattggcccaattaaagtttccgatcaattctctctggtcaaagtaccggaagag
catgtccatggcattatcaaggctctagggcggacacgaattaaagggcaaaaagtcacc
atccgcctctataaggaataa
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