Nosocomiicoccus ampullae: KPF49_02240
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Entry
KPF49_02240 CDS
T07372
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
namp
Nosocomiicoccus ampullae
Pathway
namp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
namp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KPF49_02240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
namp03019
]
KPF49_02240
Messenger RNA biogenesis [BR:
namp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KPF49_02240
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GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
TetR_C_5-like
Motif
Other DBs
NCBI-ProteinID:
QYA47283
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Position
complement(436521..438212)
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AA seq
563 aa
AA seq
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MSKTSKVNVFALGGLGEIGKNTYCVEYKDEIIIIDAGIKFPSDDELGVDYVIPDYTYLKE
NEDKIKALVVTHGHEDHIGGIPFLLKEISVPIYSGPLALGLIQNKLEEHKLMHRTSLNPI
DESDVLTFEHLSVEFYLTTHSIPEAYGVVVKTPEGNIVHTGDFKFDFTPVGEPANIAKMA
KLGEEGVLLLLSDSTNATVPNFTISEKEVGQNVEDIFRQCSGRIIFATFASNIYRVQQAI
DAAVKFNRKIVVFGRSMENNIKIGQELGYIKAPVDTFIEAKEINRYEKHQIMILCTGSQG
EPMAALSRIANGTHRQISIIPDDTVVFSSSPIPGNTMSVNKTINALYKAGADVIHGPLSN
IHTSGHGSQEEQKLMLRLIRPEYFMPIHGEFRMLKIHKELGIDTGVDKDKIFLMENGDVL
SIDRNSAEVSGKVPAGTVFVDGIGIGDIGNIVLRDRKELSEEGLAVVVVSIDFKTKTLLS
GPDIISRGFVYMRESFKLIRNSEKRLKDSIEKLLEEQENVEWFNVKQLIIQELSNHLYKK
THRKPMILPMIMRVNDETLENKK
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaaacttctaaagtaaatgttttcgccctaggtggacttggggagatcgggaaa
aacacttactgtgtggaatataaagatgaaattattattattgatgcagggataaaattc
ccaagtgacgatgaacttggtgtcgattacgttatcccagactacacttatttaaaagaa
aatgaagataaaattaaagcgcttgtcgttacgcatggtcacgaggaccatatcggtgga
attccatttttattaaaagaaatttcagtaccaatatattctggaccacttgcgcttggt
ttaatacaaaataaattagaagaacataaactcatgcatcgtacgtctttaaatccaatt
gacgaatccgatgtattaacgtttgaacatttgtctgtcgaattctacttaacaacacac
tcaatacctgaagcatacggagtcgttgtaaaaacacctgaaggaaacatcgttcataca
ggtgactttaaatttgacttcacgcctgtcggtgaacctgcaaatattgcgaagatggct
aaacttggcgaagaaggtgttcttctactactttcagactcaacaaacgcaacagtacca
aactttacgataagtgaaaaagaagttggtcaaaacgtagaagatatatttagacaatgc
tccggtcgtatcatatttgctacttttgcttcaaatatttacagagtgcaacaagcaatt
gacgcagctgtaaaattcaatcgtaaaattgtcgttttcggtagaagtatggaaaacaac
attaaaatcggtcaagaacttggctatattaaagcacctgttgatacgttcatcgaagca
aaagaaattaatcgttatgaaaaacaccaaattatgatactttgtacaggatctcaaggt
gaaccgatggcggcactctcacgtatcgcaaacggtacacaccgacaaatttcaatcatt
ccagacgatacggtcgtatttagtagttcaccaattccagggaacacgatgagtgtaaat
aagacgatcaacgctttatataaagcaggtgcagatgttattcatggcccactgtcaaac
atccatacgtcaggacacggttctcaagaagaacaaaaactgatgttacgactcattcgt
ccagagtactttatgcctatacatggtgaattccgcatgctaaaaattcataaagaactc
ggtatcgatacaggtgttgataaagataaaatcttcttaatggaaaatggagatgtctta
tcaatcgatagaaacagtgcagaagtatctggtaaagtacctgcaggtacagtattcgtt
gatggtatcggcattggagatattggaaatattgtccttcgagatcgtaaagaactatct
gaagaaggtctagcagtcgtcgtcgtatcgattgactttaaaacaaaaacattactctct
ggaccagatattatttctcgtggatttgtatatatgagagaatcatttaaactcatccgt
aactcagaaaagcgattaaaagattctatagaaaaattactcgaagaacaagaaaatgtc
gaatggttcaacgtgaagcagttaatcattcaagaactatcgaaccatttatataagaaa
acacatcgtaaaccgatgattttaccaatgattatgcgcgtcaacgatgaaacattagaa
aataaaaaataa
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