KEGG   Nosocomiicoccus ampullae: KPF49_02240
Entry
KPF49_02240       CDS       T07372                                 
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
namp  Nosocomiicoccus ampullae
Pathway
namp03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:namp00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    KPF49_02240
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:namp03019]
    KPF49_02240
Messenger RNA biogenesis [BR:namp03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     KPF49_02240
SSDB
Motif
Pfam: RNase_J_b_CASP RNase_J_C Lactamase_B Lactamase_B_2 RMMBL TetR_C_5-like
Other DBs
NCBI-ProteinID: QYA47283
LinkDB
Position
complement(436521..438212)
AA seq 563 aa
MSKTSKVNVFALGGLGEIGKNTYCVEYKDEIIIIDAGIKFPSDDELGVDYVIPDYTYLKE
NEDKIKALVVTHGHEDHIGGIPFLLKEISVPIYSGPLALGLIQNKLEEHKLMHRTSLNPI
DESDVLTFEHLSVEFYLTTHSIPEAYGVVVKTPEGNIVHTGDFKFDFTPVGEPANIAKMA
KLGEEGVLLLLSDSTNATVPNFTISEKEVGQNVEDIFRQCSGRIIFATFASNIYRVQQAI
DAAVKFNRKIVVFGRSMENNIKIGQELGYIKAPVDTFIEAKEINRYEKHQIMILCTGSQG
EPMAALSRIANGTHRQISIIPDDTVVFSSSPIPGNTMSVNKTINALYKAGADVIHGPLSN
IHTSGHGSQEEQKLMLRLIRPEYFMPIHGEFRMLKIHKELGIDTGVDKDKIFLMENGDVL
SIDRNSAEVSGKVPAGTVFVDGIGIGDIGNIVLRDRKELSEEGLAVVVVSIDFKTKTLLS
GPDIISRGFVYMRESFKLIRNSEKRLKDSIEKLLEEQENVEWFNVKQLIIQELSNHLYKK
THRKPMILPMIMRVNDETLENKK
NT seq 1692 nt   +upstreamnt  +downstreamnt
atgagtaaaacttctaaagtaaatgttttcgccctaggtggacttggggagatcgggaaa
aacacttactgtgtggaatataaagatgaaattattattattgatgcagggataaaattc
ccaagtgacgatgaacttggtgtcgattacgttatcccagactacacttatttaaaagaa
aatgaagataaaattaaagcgcttgtcgttacgcatggtcacgaggaccatatcggtgga
attccatttttattaaaagaaatttcagtaccaatatattctggaccacttgcgcttggt
ttaatacaaaataaattagaagaacataaactcatgcatcgtacgtctttaaatccaatt
gacgaatccgatgtattaacgtttgaacatttgtctgtcgaattctacttaacaacacac
tcaatacctgaagcatacggagtcgttgtaaaaacacctgaaggaaacatcgttcataca
ggtgactttaaatttgacttcacgcctgtcggtgaacctgcaaatattgcgaagatggct
aaacttggcgaagaaggtgttcttctactactttcagactcaacaaacgcaacagtacca
aactttacgataagtgaaaaagaagttggtcaaaacgtagaagatatatttagacaatgc
tccggtcgtatcatatttgctacttttgcttcaaatatttacagagtgcaacaagcaatt
gacgcagctgtaaaattcaatcgtaaaattgtcgttttcggtagaagtatggaaaacaac
attaaaatcggtcaagaacttggctatattaaagcacctgttgatacgttcatcgaagca
aaagaaattaatcgttatgaaaaacaccaaattatgatactttgtacaggatctcaaggt
gaaccgatggcggcactctcacgtatcgcaaacggtacacaccgacaaatttcaatcatt
ccagacgatacggtcgtatttagtagttcaccaattccagggaacacgatgagtgtaaat
aagacgatcaacgctttatataaagcaggtgcagatgttattcatggcccactgtcaaac
atccatacgtcaggacacggttctcaagaagaacaaaaactgatgttacgactcattcgt
ccagagtactttatgcctatacatggtgaattccgcatgctaaaaattcataaagaactc
ggtatcgatacaggtgttgataaagataaaatcttcttaatggaaaatggagatgtctta
tcaatcgatagaaacagtgcagaagtatctggtaaagtacctgcaggtacagtattcgtt
gatggtatcggcattggagatattggaaatattgtccttcgagatcgtaaagaactatct
gaagaaggtctagcagtcgtcgtcgtatcgattgactttaaaacaaaaacattactctct
ggaccagatattatttctcgtggatttgtatatatgagagaatcatttaaactcatccgt
aactcagaaaagcgattaaaagattctatagaaaaattactcgaagaacaagaaaatgtc
gaatggttcaacgtgaagcagttaatcattcaagaactatcgaaccatttatataagaaa
acacatcgtaaaccgatgattttaccaatgattatgcgcgtcaacgatgaaacattagaa
aataaaaaataa

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