Nosocomiicoccus ampullae: KPF49_03370
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Entry
KPF49_03370 CDS
T07372
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
namp
Nosocomiicoccus ampullae
Pathway
namp03410
Base excision repair
namp03430
Mismatch repair
namp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
namp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
KPF49_03370 (recJ)
03430 Mismatch repair
KPF49_03370 (recJ)
03440 Homologous recombination
KPF49_03370 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
namp03400
]
KPF49_03370 (recJ)
DNA repair and recombination proteins [BR:
namp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
KPF49_03370 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
KPF49_03370 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KPF49_03370 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
ssDNA-exonuc_C
DHHA1
DUF5503
Motif
Other DBs
NCBI-ProteinID:
QYA47495
LinkDB
All DBs
Position
663559..665805
Genome browser
AA seq
748 aa
AA seq
DB search
MYQSTYHWMMRELSDEITEDLVKEYNLSELNKTLLENRGFTTEDDLEKILNPHTHDFSLI
YDIDVATKLILKHLENNSRILIYGDYDADGITSTTILYKALKKKSASIHFFIPNRIEQGY
GLDYNFIENEVVGNFDLVITVDNGVSAIKEVELLKKNDIDVIIVDHHEFTEELPDAVIIH
PNHPEGDYPCKYLAGVGITYKLIEALELDEEEYMQLVMIGTVADMVPMFDENKYFTIKGL
KSINNNMNTGIKALLKEAGRLEEVDEETVGFTIAPRLNATGRIDEASVAVYLLLNEFPEE
ASELAADIEMLNDARKDMVDETYIEAEQLVNSDDKIQVLYSEDWHPGILGIVASRIVENY
GVPAILLTKDQDVYTGSARSINTIELLKTLRELNTDHTANGHNQAFGIKVDESLIEDFKV
ELTTLMNQSYSKLKPTKDIDFKITNPNITIKDLEELNELRPFGHGFLVPTVMVSNSTIET
IRQIGVDSKHLKMTLKDYSFEVIGFNFGHLFNETSIGEKIYTIGRLGINEFNGVKKVQLV
LEDAEIKDMQLFDMRSKNNQNFSIINKDTDIFFIAEDKEKLGSNYFHYGETIPYNVSQVI
LRDLPISMDHFETTLKQLKPSKLIAIFDDKDNLFFSGIPKVQTIEAVYNTIIHANNGAID
LKKFAPQLAKKHSITMQMLVKVTNTLEDLNRISVQNGVIFFDEENTKDLVVIESNYFKQL
KEKLNSETQLKMTSRPELKTYIEKLINE
NT seq
2247 nt
NT seq
+upstream
nt +downstream
nt
atgtatcaatcaacatatcattggatgatgagagaattatctgatgaaattacagaggac
ttggttaaagaatacaatttatcggaattgaataaaacattattagaaaatcgtgggttt
acgactgaagatgatttagaaaagattttaaatcctcacacgcatgatttttctttaatt
tatgatatcgatgtagcaacaaaattaatcttaaaacatctcgaaaataatagtcgtata
ttaatttacggagattatgacgcagatggtataacaagtacgacaattctttataaggcg
ctgaagaaaaaaagtgcgtctattcatttctttatcccgaatcgtattgaacaaggatat
ggactagattataactttattgaaaatgaagttgtcggaaattttgacctcgtaattacg
gtcgataacggtgtctcggcgattaaagaagttgagcttttaaaaaagaacgatattgac
gttataattgtcgatcaccacgaatttactgaagaactaccggatgcggttattattcac
ccgaatcatccagaaggggactatccgtgtaaatatttagcaggtgttggaattacgtat
aaactaattgaagcacttgaattagatgaagaggaatacatgcaacttgtgatgatcggt
actgttgcagacatggtgcctatgtttgacgaaaataaatatttcactataaaaggttta
aaatcaataaataataatatgaataccggtataaaagcacttttaaaagaagcgggacga
ctagaagaagtcgatgaagaaaccgtcggctttacgattgcaccgagattaaatgcaact
ggacgtattgacgaagcgagtgttgcggtatatttattgttaaacgagtttcctgaagag
gcttcagagttagcggctgatattgaaatgttaaatgatgcgagaaaagatatggtcgat
gaaacgtatattgaagctgaacaattagtaaatagtgatgacaaaattcaagtactatat
agtgaagattggcatccagggatactaggtattgtcgcgtctagaattgttgaaaattac
ggagtcccagccattcttttaacgaaagatcaagatgtttatacaggttctgcgcgctcg
attaatacaattgagctattaaaaacacttcgagagttaaatactgatcatactgcgaat
ggccataaccaagcgtttggtattaaggtcgatgaatcactaattgaagattttaaagta
gagttaacgacattaatgaatcaatcatattcaaaattaaagccgacaaaagatattgat
tttaaaataacaaatccgaacataacgattaaggatcttgaggaattaaacgaattacgt
ccatttggccatggatttttagtgccaacggtgatggtaagtaattctactatcgaaaca
attcgtcaaatcggtgtggatagtaaacacctaaagatgacattaaaagattatagtttc
gaagtcattggctttaattttggacacttatttaacgaaacgtcaatcggcgaaaaaatc
tatacgattggaagactcggtataaatgagttcaatggagttaaaaaagttcaactcgtt
ttagaagacgctgaaattaaagatatgcagttatttgatatgcgttctaaaaacaatcaa
aatttttctataattaataaagatacagatattttctttatcgctgaagacaaggaaaaa
ctagggagtaattattttcactacggtgagacaattccttataatgtgtcacaagttata
ttaagagatttaccaatttcaatggatcatttcgaaacgacgttaaaacaattaaagcct
tcaaagttaattgcgatttttgatgacaaagacaacttattttttagtggaattcctaaa
gtacaaacgattgaagcagtatataatacgattatccatgcgaataatggtgcgattgat
ttaaaaaagttcgcgccacaactcgcgaaaaaacatagtataactatgcaaatgctagtg
aaagtgacaaatacgttggaagatttaaatagaatttcagtccaaaacggtgtcatattt
ttcgatgaagaaaatacaaaagaccttgttgtcatagagtcgaattattttaagcaacta
aaggaaaaattaaactcggaaacacaattaaaaatgacgtcacgaccagaattaaaaaca
tacattgaaaaattaattaatgaataa
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