Nosocomiicoccus ampullae: KPF49_06525
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Entry
KPF49_06525 CDS
T07372
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
namp
Nosocomiicoccus ampullae
Pathway
namp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
namp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KPF49_06525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
namp03019
]
KPF49_06525
03009 Ribosome biogenesis [BR:
namp03009
]
KPF49_06525
Enzymes [BR:
namp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KPF49_06525
Messenger RNA biogenesis [BR:
namp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KPF49_06525
Ribosome biogenesis [BR:
namp03009
]
Prokaryotic type
rRNA helicases
KPF49_06525
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
SNF2-rel_dom
NAT10_TcmA_helicase
AAA_19
Flavi_DEAD
SUa-2TM
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QYA46608
LinkDB
All DBs
Position
complement(1244116..1245588)
Genome browser
AA seq
490 aa
AA seq
DB search
MKFFESLGVSNETILALEEMGFETPTPIQEESIPLALEGRDILGQAQTGTGKTGAFGIPI
VEKVKRGHGTQTLILAPTRELAMQVSEQLKQFSKYKKLKVSVIFGGVSIERQISELKRKP
EIIVGTPGRVIDHINRKTLKLNHITKFVLDEADEMMNMGFIDDVEFIMSRLPEKDRQTLL
FSATMPKAIQELVTKFMGQPKIVKTMNHNQSDPQIEEYYTIVKELEKLDVFVDFLDVHRP
KLAIVFGRTKRRVDELTSALIAKGYLAEGLHGDITQSKRLEVLKKFKNDALQILVATDVA
ARGLDITGVTHVYNFDIPQDAESYTHRIGRTGRAGESGVALTFVNPIEMGYLRLIEETKG
KTIRPLRPPFKEEVKAAQAEVMIDKVRKYEGKEIDEEVYELSRKLVETFDPLDIITAFVS
EYINDKEDDAIQLSFEKPLPRRASSKQSNGKRKDFNRGKKNERNNRRKPNKRNTSRKKRS
DNKTFKQFMK
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
ttgaaattttttgaatcacttggtgtaagtaacgaaacgatacttgcacttgaagaaatg
gggtttgaaacaccaactcctatacaagaagaaagtattccactcgcattagagggtaga
gatattttagggcaagcacaaacaggtacaggtaaaacaggtgcttttggaattcctatc
gtagaaaaagttaaacgtggacacggtactcaaacacttattttagcaccgacgagagaa
cttgcaatgcaagtgagtgaacagctcaaacaattttctaagtataaaaaattaaaagtg
tctgtcatattcggcggagtatctattgaacgccaaatttctgagttaaagagaaaacct
gaaattattgttggtacaccgggacgtgtaattgatcatattaaccgtaaaacgttaaaa
ctaaatcatattacgaagtttgtacttgatgaagcagatgaaatgatgaacatgggcttt
atcgacgatgttgaatttattatgagtcgtttgccagaaaaagaccgtcaaacattatta
ttcagtgcaacgatgcctaaagcaattcaagaacttgtcactaagtttatgggccaacca
aaaatcgtaaaaacgatgaatcataatcaatcagaccctcagattgaagaatattatacg
atagttaaagaattagaaaagctagacgtatttgttgattttctagatgttcatcgtcca
aaacttgcgattgtattcggtcgtacgaagcgtcgtgtggacgagctaacaagtgcgtta
attgcaaaaggatatttagcagaaggactgcacggtgatattacacagtcaaaacgtctt
gaagtgttaaaaaagtttaaaaatgatgcacttcaaattttagttgcaacagatgttgct
gcacgtggattagacattacaggtgtgacacatgtatataactttgatattccacaagat
gcagaaagttacacgcatcgtatcggtcgtacaggacgtgcgggtgaaagtggtgttgct
ttaacatttgttaacccaattgagatgggttatctacgtttaatcgaagagacgaaaggt
aagacgattcgtccgttaagaccaccatttaaagaagaagtcaaagctgcacaagcagaa
gttatgattgacaaagttagaaaatatgaaggtaaagaaatcgacgaagaagtatacgaa
ctatctagaaaattagttgaaacgttcgatccgttagatattattacagcattcgttagc
gaatatataaatgataaagaagatgatgcaattcaattgtcatttgaaaagccattacca
agacgtgcatcatctaagcagtctaatggtaaacgcaaagattttaatcgcggcaaaaag
aatgaacgtaacaaccgacgtaaaccgaacaaacgaaatacaagtcgaaaaaagcgttct
gacaataaaacatttaagcaattcatgaaataa
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