Candidatus Nanosynbacter sp. HMT-352: LR957_00025
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Entry
LR957_00025 CDS
T09649
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
nanh
Candidatus Nanosynbacter sp. HMT-352
Pathway
nanh03030
DNA replication
nanh03410
Base excision repair
nanh03420
Nucleotide excision repair
nanh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nanh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LR957_00025 (polA)
03410 Base excision repair
LR957_00025 (polA)
03420 Nucleotide excision repair
LR957_00025 (polA)
03440 Homologous recombination
LR957_00025 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nanh03032
]
LR957_00025 (polA)
03400 DNA repair and recombination proteins [BR:
nanh03400
]
LR957_00025 (polA)
Enzymes [BR:
nanh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LR957_00025 (polA)
DNA replication proteins [BR:
nanh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LR957_00025 (polA)
DNA repair and recombination proteins [BR:
nanh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
LR957_00025 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LR957_00025 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
HHH_5
HHH_2
TrkA_C
Motif
Other DBs
NCBI-ProteinID:
UHA57386
LinkDB
All DBs
Position
3949..6486
Genome browser
AA seq
845 aa
AA seq
DB search
MKRLVVIDGKSVFYRGYYAMPGLSMADGTPTGGVYGFVSLAIELIKKLEPDYVAVAWDKR
GTNIRKRRELYPEYKAGRKPAPDDFYQQIPILHELLDAFGWPLYEIDDYEADDIMGAFAR
QAESRGIETCLITSDLDALQLISPMTKVYAMKNGLRNIEEFTAEHFEEKYGIRTEQFLDL
KALKGDSSDNLPGVPGIGEKTAVKLLQEYETLDGVYEHLDEQKGALRTKLENGRESAYLT
KQVAEIWTDVPIELDWDVADVNDCDFARVTEILQKLEFNSLIGRLPRTMQMAENEKKEEP
KLDIPRIEKLPDMPMFEAENIIYIDSSEPDVIYISSNPESAWTAKIDEISQSVWQLLAQG
TVIAADVKRLYHALDNYGVAVRFHEVWDVEQAAFLIDPLKRDRSLNALSGDFSDDNSAPY
QLARLHKIYREQKVYMSNNSQIARVAYEFDFPVIWALFQMEKRGMKLDDTLLKQMGDELA
AEVDELEQQMYSMAGYEFNASSPAQLSEVLFTKLQLPTAGIKKGKTGYSTGQKELDKLRG
QHPIIELIERYRELTKLISTYIEALPKLMATDGRIHTTFNQDVTSTGRLSSTNPNLQNIP
VRTELGRKIRQAFVPSDGKVFVGADYSQFELRLAAVLAGDEKLIEDFNSDVDIHAKTAAE
TYGISIDEVSKSQRRAAKVINFGVLYGMSPHGLAAATGMSFTEAKKFIDHYFEVRKPIRQ
YLDKILTQAREQGFVETYFGRRRPTPDVKSSNFMVRSSAERAAMNMPIQGTEADLMKLAM
IRLEDKLSGLADAILQVHDSILVECKPEDVQKVSEIMKAEMEGVCPELPIKLKVDVGTGV
NWGEV
NT seq
2538 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgtctagtagttattgatggaaagtcggtgttttaccgaggttattatgctatg
ccgggattgtcgatggctgacggaactccgactggtggtgtgtatggatttgtaagtttg
gcaattgagctaattaagaaattagagccggattatgtggcggtagcttgggataagcga
ggtacgaatatccgcaagcggcgggaattatatccagaatataaagctggtcgcaagccg
gcgccagatgacttttaccagcaaattccgattttacacgagctgcttgatgcgtttggt
tggccgctttatgaaattgatgattacgaggcggacgatattatgggcgcgtttgccagg
caagcagaatctcgcggaattgaaacgtgcttgataacgtcggatttggacgcattgcaa
ttgatatcaccgatgaccaaagtctacgccatgaaaaatggtttaaggaatattgaggaa
tttacggcggaacactttgaagaaaaatatggaattcggacggaacaattcttagatttg
aaagcgctgaagggtgattcaagtgataatttaccgggagtgccgggaattggtgagaaa
acggcggtgaaattattgcaagaatatgaaactctggacggagtttatgaacatctggac
gagcaaaaaggcgctttgcgaacgaagttggaaaatggtcgcgagtcggcatatttgacc
aagcaagtggcggaaatttggacggacgtgccgattgagctggactgggatgtggcggat
gttaatgattgcgactttgcgcgagtaacggaaattctgcagaagttggagtttaattcg
ctgattggacgattgccgcgaacgatgcaaatggcggaaaatgagaaaaaagaagaaccg
aagttggatattccacgaattgaaaaattgcccgacatgccgatgtttgaggcggaaaat
ataatatatatcgattcgtcggagcctgacgtaatttacataagctcaaatcctgagtcg
gcgtggacggcgaaaattgatgagattagtcaatccgtgtggcaattattggcgcaggga
actgtgatcgcggctgatgtcaaacggttatatcacgcgttggataattatggcgtggcg
gtgcgttttcatgaagtttgggatgttgagcaggcggcatttttgattgatccgctgaag
cgtgatcgtagtttgaatgcactgtctggtgatttttctgacgacaattccgcgccttat
caattggctcgcttgcacaaaatttatcgtgaacaaaaagtttacatgtcgaacaattcg
caaattgcgcgtgtggcttacgagtttgattttccagtaatttgggcgctattccagatg
gaaaaacgtgggatgaagttggatgatacgctattaaaacagatgggcgatgagctggcg
gcggaagttgatgagcttgaacaacaaatgtattccatggcaggatacgagtttaacgcg
tctagtccagcgcaactttctgaggttttgtttaccaaattgcaattaccaactgcgggc
ataaaaaagggaaaaactggatattcaacaggtcaaaaagagttggacaaattacgtgga
caacatccgattatcgagttgattgagcgatatcgagaattgaccaaattgatcagtacg
tacattgaggcgttaccaaaattgatggcgactgatgggcgaattcacactacattcaat
caggatgtaaccagcacggggcgactaagcagtacaaatccgaatttgcagaatattccg
gtgcggactgaactgggtaggaaaattcgtcaggcattcgttccgagtgatggcaaagtt
tttgtcggtgcggattattcgcaatttgagctgaggctggcggctgtgctggcaggcgac
gagaaattgattgaagactttaatagcgatgttgatattcacgcaaaaacggcggcggaa
acatacggaatatcgattgacgaagtaagcaaatctcagcgtcgagcggctaaagtgatc
aattttggtgtactttacggaatgagtccgcacggtttggcggcggctacgggaatgtca
tttacagaggcgaaaaagtttattgatcattattttgaggtgcgaaagccgattcgtcag
tacttggataaaattctaactcaagcgcgggaacagggatttgttgagacgtattttggt
aggcgacgaccaactcctgatgtaaaatcgagcaattttatggtgcgatcttcggcagaa
agagctgcgatgaatatgccaattcaaggcacggaagcggatttgatgaaattggcaatg
attcggctggaggataaattgtcgggcttggctgatgcgattttacaggttcatgattcg
attttggtggaatgcaaacctgaagacgtccagaaagtcagcgagattatgaaagcggaa
atggaaggcgtttgtccagaattgccgattaaattgaaagtagatgtcgggacgggcgta
aattggggcgaagtgtag
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