Candidatus Nanosynbacter sp. HMT-352: LR957_00080
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Entry
LR957_00080 CDS
T09649
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
nanh
Candidatus Nanosynbacter sp. HMT-352
Pathway
nanh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nanh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LR957_00080 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nanh03019
]
LR957_00080 (pnp)
03016 Transfer RNA biogenesis [BR:
nanh03016
]
LR957_00080 (pnp)
Enzymes [BR:
nanh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
LR957_00080 (pnp)
Messenger RNA biogenesis [BR:
nanh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LR957_00080 (pnp)
Transfer RNA biogenesis [BR:
nanh03016
]
Prokaryotic type
tRNA degradation factors
LR957_00080 (pnp)
BRITE hierarchy
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
KH_1
PNPase
KH_2
KhpA-B_KH
Spt6_S1
Motif
Other DBs
NCBI-ProteinID:
UHA57396
LinkDB
All DBs
Position
13677..15794
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AA seq
705 aa
AA seq
DB search
MSIINPSGKEIFSVTTDFCGRPLTLEVNRVGFRTTGSVLVRYGDTVVLGSAQVSSRPVQL
DYFPLSIDYEEKFYAAGKISGSRFIKREGRPSDEAVLIGRLIDRPIRPLFPKGYRQEIQV
VATVLSMDPSFRPDVIAMIAASSALMLTGTPFDGPVAGLRVGRVNGEFKAFLTPEEREKS
DLDLVVAGIESGITMVEAGAKEVSEDVIVDAMAWAHQMMQPAIALQRELAEKVAPAQQEY
DLILPDESIQQTVDAWVDGKFGEKIRRPYPERNEMISEIRAEFHEAMVEKLGLDEEEYSE
VRGDYDEAFTLALHKDVRRGIVAERVRPDGRQLTEIRPLSSEVGFLPRAHGSSLFTRGVT
QGMNIVTLAPLSYSQLIDTMEITDGERRYMHHYNAPGYTVGEVKRMGSPGRREIGHGYLA
ERALLPVLPTEEDFPYAIRSVTEIMSQNGSTSMAATCSSCLALMDAGVPISAPVSGIAMG
LMMDGDTPYVLSDIADAEDFAGDMDFKVTGTSKGITALQMDMKVHGLPVAILRQAIEQSK
AGRAHILEHMLSVLPEPRESLSPYAPRIEKIKIDPDKIGVIIGKGGETINKITSETGAEI
DIKEDGLITVASPDGASIEKAMNWIKGLVEEPEVGKIYEGKVVGIKDFGAFVNILPGVDG
MVHISKLAERRVEKVTDVVKEGQTVRVKITGIDERGKINLTMIGL
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atgagtattatcaatccaagcggcaaggagatttttagtgttaccactgatttttgtggt
cgaccgctgactttagaagtgaatcgcgtcggttttaggacgactggtagcgttttggtg
cgctatggcgatactgtagttttgggtagcgctcaagttagctcgcgtccagtgcaattg
gattattttccattgtcgattgattacgaagaaaaattttatgcagcaggtaagatttct
ggcagccgatttatcaagcgtgaaggtcgcccgagtgatgaagctgtattgattggtcga
ttgattgatcgtccgattcgtccgcttttcccgaagggttatagacaagaaatccaagtc
gttgcaactgttttgagtatggatccgagtttccgtccagatgtaattgcgatgatcgct
gcgtctagtgcgttaatgttaactggcacgccgtttgacggtccagtggctggtttgcgc
gtgggtcgagtgaatggcgaatttaaggcgttcttgactccggaagagcgcgaaaagtca
gatcttgacttggttgtggctggtattgaaagcggcataacaatggtagaggctggtgct
aaagaagtttcagaagacgttatcgttgatgcgatggcgtgggcccaccagatgatgcag
ccagcaattgccttgcagcgcgaattggcggaaaaagttgcgccagcacagcaggaatat
gatctaattttgccagatgaatcaattcagcaaacggttgacgcgtgggttgatggaaaa
tttggtgagaaaattcgtcgaccatatccagagcgcaatgaaatgataagcgaaattcgc
gccgagttccatgaggcgatggtggaaaaattgggactggacgaggaagaatatagcgaa
gttcgtggtgattatgatgaagcgtttactttggctttacataaagatgttcgtcgagga
attgtcgctgagcgagttcgtcctgacggtcgacaattgaccgagattcgtccgcttagc
tcagaagttggattcttgccgcgcgctcacggttccagcttatttacgcgtggcgtaact
cagggaatgaatattgtgactttggcgccactgagttattcgcaattgattgacactatg
gaaattaccgacggtgagcgacgttatatgcatcactacaatgcgccgggctatacagtt
ggtgaggttaagcgaatgggcagtccaggtcgacgtgaaattggtcacggatatttggcg
gaacgtgctttgcttccagttttgccaactgaagaggattttccatacgctattcgctca
gttactgagattatgagtcagaatggctctacttcgatggcggcgacctgttctagctgc
ttggcgttgatggacgctggcgtgccaatttcggctccagtgagtggaattgcgatgggt
ctaatgatggacggcgatactccgtatgtgttgagcgatatcgctgatgctgaggacttt
gctggcgatatggactttaaggtaaccggaacctcaaagggtattacggctcttcaaatg
gatatgaaggttcatggcctgccagtggcgatattgcgtcaggcaattgagcagagtaaa
gcggggcgtgcgcacattttggaacatatgcttagcgtgcttccggagcctcgtgagtcg
ctcagtccgtatgcgccacgaattgagaagattaagattgacccagataagattggcgtg
attattggtaagggtggcgagacgatcaataagatcacttcggaaactggtgctgagatt
gacattaaggaagatggtttgattactgtggctagcccagacggcgcgtcgattgaaaag
gctatgaattggattaagggtctggttgaggagccagaagtcggcaagatttacgaaggt
aaagttgttggcattaaagattttggtgcatttgtgaatatacttcctggtgttgacgga
atggttcatatttcaaaattggcagaacgtcgagttgaaaaagtgactgatgttgtgaaa
gaagggcaaactgttcgcgtgaaaattactggaattgacgagcgcggtaagattaatttg
acgatgattggtttgtaa
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