Candidatus Nanosynbacter sp. HMT-352: LR957_00480
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Entry
LR957_00480 CDS
T09649
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
nanh
Candidatus Nanosynbacter sp. HMT-352
Pathway
nanh03410
Base excision repair
nanh03430
Mismatch repair
nanh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nanh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LR957_00480 (recJ)
03430 Mismatch repair
LR957_00480 (recJ)
03440 Homologous recombination
LR957_00480 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nanh03400
]
LR957_00480 (recJ)
DNA repair and recombination proteins [BR:
nanh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
LR957_00480 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
LR957_00480 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LR957_00480 (recJ)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
PIGA
Motif
Other DBs
NCBI-ProteinID:
UHA57464
LinkDB
All DBs
Position
92179..93813
Genome browser
AA seq
544 aa
AA seq
DB search
MTLFEKILASRGLTMRAAREEFLHPNYASVKHDPFLLPDMRKAVDRLKKAHTEGEKIVIY
GDYDIDGLSATAILLDAFGKFGFKEVGAFIPNRFVEGYGMTMGAVDKVRNMGADLIVTVD
TGSLCHAEIEYASSLGIDTVVTDHHNVAETPPPSIAAVNPKFPGHKYPFRDLCGAGVAFK
LVQALQTELDGLPDGYEKWLLDLVALGTVCDIVTLADENRANVYWGLEVLRKQRRPGLKA
LMSAAGIEPEKVNARHLGFGLGPRMNAAGRLETAQYALDMLTANDGLEALEASEKLEELN
IKRRSIQDEIFDEACQQADNMTDDRVLVVNSGNWNHGVIGIVASKLVEKYKKPVFIIGER
GDEATGSARSFGDFSAADAVRAADDIIIKGGGHGAAAGVTLATERIDDFRQRVNEFYDSL
QLKNQELYLLPRADVEIDDFSEINEELIDNLAKMEPFGNGNTEPILKITKATVLSVRRMG
VDGQHVKLNLRDKNNITLQMLAFNAPEEFFREVGDEVSAWFQPTINEWQGMKSVEGRLLH
ISGV
NT seq
1635 nt
NT seq
+upstream
nt +downstream
nt
atgacattatttgaaaaaattttagcgtctcgaggcttgactatgcgtgcggcgcgtgag
gaatttttgcatccgaattacgcgtcagtaaagcatgatccgtttttattgccagatatg
agaaaagcggtggaccgcttgaaaaaggcgcacactgagggcgagaaaattgttatttac
ggcgattacgatattgacgggctgagtgcaacggcaattttgttggatgcgtttggtaaa
tttggctttaaggaggttggtgcatttattccgaatcggtttgttgagggttacggaatg
acgatgggagccgttgataaggtgcgaaatatgggcgcggatttaattgtcacggttgat
acgggaagtttgtgtcatgcggaaattgaatatgcgtcgagtttggggattgatacggtg
gtgactgatcaccataatgttgctgagactccgccgccgagtattgctgcggttaatccg
aagtttcctggtcataaatatccgtttcgcgatttatgcggcgcgggtgtggcgttcaag
ctggtgcaagccctacaaaccgaactggacgggctaccagatggttacgagaagtggcta
ttggatctggtggcgctggggacggtttgcgacatagttacgctggcggatgaaaatagg
gcgaatgtctattggggcttggaggttttgagaaagcagagacgtcctggtttgaaggca
ttgatgtcggcggcgggaattgagccggagaaggttaatgctagacatttgggatttggt
ctggggccgcgaatgaacgcggcgggtagactggagacagcgcaatatgctctggatatg
ctgacggcgaatgacggactggaggcgctggaggctagcgaaaagttggaagaattgaac
attaagcgtcgcagtattcaggacgagatttttgacgaagcttgccagcaggcggacaat
atgactgatgatcgagttttggtggtgaatagcggaaattggaatcacggagttatcggc
attgtggcgtcaaagttggttgagaaatataagaagccagtttttataattggcgagcgt
ggcgatgaggctacgggttcggcgcgaagttttggtgatttttccgcggccgatgcagtt
cgcgcagctgacgatatcattattaaaggcggtggtcacggagcggcggcgggcgtgacg
ctggcgaccgagagaattgacgattttaggcaacgagtgaatgagttttacgattcgtta
caattaaaaaatcaggaattatatttgctgccgagggctgacgtggagatcgacgatttt
tcggaaattaatgaagaactgattgataatttggcaaaaatggagccgtttggcaatggt
aacacggagcctatattgaagataaccaaagcgacggttttgagcgtgaggagaatgggt
gtggatgggcaacatgtgaaattgaacttgcgtgataaaaataatattacgctgcagatg
ttggcttttaatgcgccagaagaatttttccgtgaagtgggcgacgaagtgtctgcttgg
ttccagccaaccataaatgagtggcagggaatgaagtcggttgaagggcgattgttacat
atttctggggtgtag
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