Candidatus Nanosynbacter sp. HMT-352: LR957_00965
Help
Entry
LR957_00965 CDS
T09649
Name
(GenBank) type IV secretion system DNA-binding domain-containing protein
Organism
nanh
Candidatus Nanosynbacter sp. HMT-352
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF8128
TrwB_AAD_bind
DUF87
TraG-D_C
T4SS-DNA_transf
AAA_10
ABC_tran
AAA_29
Motif
Other DBs
NCBI-ProteinID:
UHA57559
LinkDB
All DBs
Position
complement(181930..184578)
Genome browser
AA seq
882 aa
AA seq
DB search
MQIISWLIGTLLQWYVWMPIVAVLMFLTWRNYRKIEDFTPVESVLLVLEIPRTNDKQELA
AEQLFASLHGILRDNKELRLSGGHQEHISFEIASVNGQIRFYVWVPKTLQSFVEGQIYSQ
YPTVQIHQADEDYTEHERDHEVAYSTELTLTTDEFLPIRTFQNFEVDPLAGITGTLAKLE
TTGEELWIQVLVRPIPDDWQNAADRYINSIKNGRMFSLPGFGGSMQWLIGVLGALWQPPE
QGANQSTAVELSDRDKTRISEAEKKATKLGYEVKIRLVYMGESQTNAKLRMQALVGTFKQ
FNSTNLNGFRATKGMFGKEFIDKYRKRSFIGDGFILNIEELASVFHLPHTNVETPNIVWA
SSKTAEPPSKLPVLTGEDVNDDQISAFGVTNFRGISHQFGMLRYDRSRHVYIIGQTGAGK
SGLLELFALSDIFHNQGYAIIDPHGDFAINNMKFIPGSRLNDVIYFNPADTAYPLGFNPL
EVTNPNQKTNISSEIIGVLKRIFGDSWGPRLEYILRYTILALLDRPEATMLDITRMLTDK
EFRKETLTYCRDTVVLQFWNVEFASWNDKFVAEAIAPVLNKVGAFTANPIIRNIIGQPKS
TFNIRQIMDEGKILIVNLSKGLIGEDNAAILGSFLVTKIQLAAMSRSDIPDVRDRRPFYL
YVDEFQNFATDSFATILSEARKYGLNLTVANQYISQMSDTVRDAVFGNVGTMISFRVSAD
DAPILAKQFEPNFEAIDLLQMHNRNFVVNMVIGGEKTPAFSARTLELPPSQADNTPHIIE
HSRRMYSRNREDVEKEIDAAIKPVRNQKKQPAKPQPQPANNAPAVNSQPEKQQPAANDGE
VVLQIRGNDNTPTETAISTVTPLASATPKRRRRRRKKSTTAD
NT seq
2649 nt
NT seq
+upstream
nt +downstream
nt
atgcaaatcatttcttggctcatcggtacgttattgcaatggtatgtttggatgccaatc
gtggcagtcctgatgtttttgacgtggcgtaattatcggaagatagaagatttcacccca
gttgagagcgtgcttttggttctggaaatcccacgcacaaatgataagcaagaacttgcc
gccgagcagttattcgcttcactacacggaattcttcgcgacaataaagaattgcgatta
tctggcgggcaccaagagcacatcagctttgaaatcgcctccgttaatggtcagatcaga
ttttatgtttgggtgccaaaaaccctgcagagctttgtcgagggacagatttattctcaa
tacccaaccgttcaaattcaccaagccgacgaagattacactgagcacgagcgcgaccac
gaagttgcttactcgacagaattgacattaaccacagatgaatttctcccgattcgcacc
ttccaaaacttcgaagtcgacccgctggcaggcattacgggtacgctagcaaaattggaa
accaccggcgaagaattatggattcaggtgctagtcagaccaatcccagatgactggcaa
aacgccgcagatcgatatatcaatagtataaaaaacggacgaatgttctccttgccagga
ttcggcggcagtatgcaatggctaatcggtgtacttggtgcgttatggcaaccaccagag
cagggagcaaatcaatcgacagccgttgagctatcagaccgcgataaaactcgcatttct
gaagcagagaaaaaggcgaccaagctcggctatgaagtaaagattcgcttggtttatatg
ggcgaaagtcagacaaacgctaagcttcgcatgcaggcgctcgtcggtacgtttaagcag
ttcaactcaacaaatctcaacggatttcgcgccaccaagggtatgtttggtaaagaattt
attgataaatatcgcaagcgttcgttcatcggcgacggcttcatcttaaacatagaagaa
ttggcgtcagtttttcacttgccacataccaacgttgaaacgccaaatatagtttgggca
agttccaagaccgcagaaccgccgtccaaattgccagtcttaactggcgaagatgtcaac
gatgaccaaatttctgcctttggcgtcaccaacttccgcggtatcagccatcaattcggt
atgttgcgctatgaccgctcacgccacgtttacataatagggcaaacgggcgccggaaag
agcggactattagagctcttcgccttaagcgacattttccataatcaaggatatgccatc
atcgacccgcacggcgacttcgcaatcaacaacatgaaatttatccccggcagccgattg
aacgacgtgatttattttaatccagccgacaccgcgtatcctctggggttcaacccgctg
gaagtcacgaacccgaaccaaaaaaccaacatttcatcagaaatcatcggcgttttgaag
cgtattttcggcgattcgtggggaccgcggcttgaatatattttgcggtacactatttta
gctttgctggatcgaccagaagcgacgatgcttgatattactcgcatgctaacagataag
gaattccgaaaagaaacgctgacttattgtcgcgacaccgtggttttgcaattctggaat
gtcgaatttgccagctggaatgacaagtttgtggccgaggcgattgcgccagtcttaaat
aaagtcggagctttcaccgccaatccaatcatccgtaacatcatcgggcagccgaaatct
acgttcaatattcgccaaattatggacgaaggaaagattctaattgtcaatctgtccaaa
ggtcttatcggcgaagataatgctgccatactcggttcgttcttggtcacaaaaatccag
cttgccgctatgtctcgaagtgacattcctgacgtccgcgaccgccgtccattctatctt
tatgtcgacgagtttcagaacttcgccaccgattcatttgcaactattctatccgaggct
cgaaaatatggccttaacttgaccgttgccaaccagtatatttcccagatgagcgacaca
gttcgtgacgcagttttcggaaacgtcggcaccatgatttctttccgagtttctgctgac
gatgcaccaattcttgctaagcagtttgagccgaacttcgaggcaatcgaccttctacag
atgcacaatcgtaatttcgttgtcaatatggttatcggcggcgagaaaactcccgcgttt
tctgctcgcacattggagcttccgccaagccaagccgacaacacgccacacattattgaa
cactcgcgtcgcatgtattcgcgaaacagggaagatgtcgagaaggaaattgatgccgca
ataaaacctgtccgcaaccaaaaaaagcagcctgccaaacctcaaccgcaacccgcaaac
aacgctccagcggtcaatagccaaccggaaaagcagcaacccgcagcaaacgacggcgaa
gttgttttgcaaattcgcggcaatgataacacacctacagaaaccgcaattagcacagtt
acgccactagcctcggccacaccaaagcgacgacgtcgccgacgaaaaaagagcactacc
gccgactaa
DBGET
integrated database retrieval system
