Candidatus Nanosynbacter sp. HMT-352: LR957_02035
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Entry
LR957_02035 CDS
T09649
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
nanh
Candidatus Nanosynbacter sp. HMT-352
Pathway
nanh03030
DNA replication
nanh03430
Mismatch repair
nanh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nanh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LR957_02035 (dnaE)
03430 Mismatch repair
LR957_02035 (dnaE)
03440 Homologous recombination
LR957_02035 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nanh03032
]
LR957_02035 (dnaE)
03400 DNA repair and recombination proteins [BR:
nanh03400
]
LR957_02035 (dnaE)
Enzymes [BR:
nanh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LR957_02035 (dnaE)
DNA replication proteins [BR:
nanh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LR957_02035 (dnaE)
DNA repair and recombination proteins [BR:
nanh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LR957_02035 (dnaE)
BRITE hierarchy
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
PAZ_4
T2SSK
DUF655
Motif
Other DBs
NCBI-ProteinID:
UHA57087
LinkDB
All DBs
Position
complement(382259..385999)
Genome browser
AA seq
1246 aa
AA seq
DB search
MTEGTSEQSSSAALKPSDFVHLHNHTFHSVLDGLTKINDLVDKVKELGMEAAAVTDHGTM
SGILDYYKTAKKAGIKPIIGIETYVATRSRFDRDPGKDKQRFHLTVLAMNNTGFHNLMKL
STRANLEGMYYKPRIDHELLEELNEGLIVLSGCASGEIGVALKEDDYDRARDIAKWYKSI
LGDRYYLELQDHGHPKSNTHWDVQAKINEGLIKLSKELDIEMVVTCDGHYLTHEYQDAHE
ILLCVGTGSYLSDEKRMSLKDFELHLTDPRDIIDHWGEEFPEVIRNTKKIADRCDVEIEL
GRILIPKYPLPDGENEHSYLLKLTYQGLLQRYNGASKEEAEKLDPDEIIPQLSEEVRERA
KMELGVMGNMGYEGYFLIVQDFINWGKSQGIVFGPGRGSAAGSIIAYALNITDLDPLKYG
LLFERFLNPDRISMPDIDVDIQDTRRDEVIEYCAKKYGEDHVSNIATFGKMFGRMAVRDV
ARVLEVPYAESDRLAKLVPPPNQGRHIPLSVSIKEDADLRNEYENNPTAKEVLDYAIQLE
GTIRSHGVHACGVVIAPDTLVNYIPLEMAQKGVVATQFPMGEVEELGLLKMDFLGLSNLT
IINNAMRIIRKAYKKEINLSELPLDDKKTYELFQRGDTTGVFQLESAGMKRYLRGLKPTT
FEDIIAMVALYRPGPMQFIDSFIRRKHGEEEITYLHPGMKNSLKNTYGILVYQEQFMQIS
KEWCGFTGGQADTLRKAVGKKKIDLMKKVKPEFVEGAVKVGGATKEIAETFWTQLEEFAN
YCFNKSHAACYGLIAYWTAYLKAHYPDAFMAALMTSDHDDTDRLAIEITECKHMGISVLS
PDINESFVEFAVVPNENKIRFGMSAVKGVGVGAVEEVLRAREDGPFTSVEDFARRVSTSK
FNRKAWESLIKSGAFDDMGDRSDLLFNLDSITSFASKLQKEAASGQTNLFGMLGGDDAAS
VQSTLHLQKAPVKHDDKERLMWERELLGLYISAHPLDRYETYLSEQTQPLTQLVPEYDSR
MMTVGGIISTVRTIVTKSGSKMAFVGIEDKFGEGEIIVFPNLYEKVGAKLVQDAVIRVSG
KNSARDRDGNLGNESKLIADDIIVITDNDINGYESTGRKMDAPKISSAVKKERREAYRNQ
KNGISPKSAVKNDAAKPQPKTHSAPVNVAPEIPASKLFVYIKDPNDHSRLVKMKSVCGEN
AGTTDVVLVLGEKEKSAMRLPFKVDANDNLLSQLKNTLGEECVVLK
NT seq
3741 nt
NT seq
+upstream
nt +downstream
nt
atgactgaggggacaagcgaacaatcatcgtcggcggctttgaaaccgtcggatttcgtg
catcttcataatcacacttttcattcggtgctggacggattgactaagattaatgacttg
gtcgataaggttaaggaactcggaatggaggctgcggccgtaactgatcacggcacgatg
agtggtattttggactattacaagaccgccaaaaaagcgggaattaagccgattatcgga
attgaaacttatgtggcaactcgttcacgatttgatcgcgatccaggcaaagataagcag
cgttttcacttgactgtgctggcgatgaataacacgggttttcacaacctgatgaagttg
tcgacgcgtgccaatctggagggaatgtattataagccacgaattgatcatgaacttttg
gaggagttgaatgaaggccttatcgttctgagtggttgcgcgagcggtgaaattggcgtg
gcactgaaagaagatgattatgatcgcgctcgtgatattgccaaatggtataagtcgatt
ttgggggatcgttattatttggagctacaggaccatggtcacccgaagtcgaacacgcac
tgggatgtgcaggcgaagatcaacgagggtttgattaagctttcaaaagagcttgatatt
gaaatggtggtgacttgtgatggtcactatttgacgcacgaatatcaagacgcgcacgag
attctgctttgtgttgggacgggatcgtatctcagtgatgaaaagcgaatgagcttgaag
gattttgagcttcacttgacggatccgcgcgatattattgatcactggggcgaggaattt
cctgaagttattcgcaacacgaaaaaaatagctgatcgctgtgacgttgagattgagctt
gggcgaattcttattccaaaatatccattgccagacggcgagaatgaacattcatacctg
cttaaattgacatatcaaggtttattgcagcgttacaatggagcttcgaaggaggaggct
gaaaagttggatcctgacgaaattatccctcagttatccgaggaggttcgtgagcgcgct
aagatggagcttggtgtgatgggtaatatgggctatgagggatacttcttgattgtccag
gactttatcaactggggaaaatcgcagggaattgtttttgggcctgggcgcggtagtgcg
gctggctcgattattgcgtatgcactgaatattacagatcttgaccctctaaaatatggt
ttgctgtttgagcgatttcttaatcctgatcgtatttctatgcccgacattgacgtcgat
attcaggatacacgtcgcgacgaggtgattgaatattgtgcaaaaaaatatggcgaagat
catgtcagtaatatcgcaacgtttggtaagatgtttggtcgtatggcggtgcgtgacgtg
gctagggttttggaggttccgtacgccgagagcgaccgcttggcgaagttggttccgccg
ccaaaccaagggcgacatattccgttatctgtgagtattaaagaagatgcagatcttcgg
aatgagtatgagaataatccgaccgcgaaggaagttttggattatgcaattcagttggag
gggacgattcgtagccacggcgttcatgcttgtggtgtggtgatcgcgccagatacgctg
gtcaattatattccgcttgaaatggcgcaaaagggtgtggtggcaactcagttcccgatg
ggcgaggttgaagagttgggcctattgaagatggactttttgggactttcgaaccttacg
attattaataacgccatgaggattatccgaaaagcttacaagaaagaaattaacctttcg
gagttgccgcttgatgataaaaagacctatgagctgtttcagcgtggcgacacgactggc
gtattccagttggaatcggcgggaatgaagcgatatttgcgcggactaaagccgactacg
tttgaagatattattgctatggtggctctttatcgtccgggtccgatgcagtttattgac
agttttattagacgtaaacacggcgaagaagagataacttacttgcatcccggaatgaaa
aactcgctgaaaaatacctacggaattttggtctatcaggagcagtttatgcagatttct
aaggaatggtgcggatttactggtggtcaggctgacacattgcgtaaggccgttggtaag
aaaaaaattgacttgatgaaaaaggtcaagcctgaattcgtcgaaggtgcggttaaagtt
ggtggtgcaactaaggaaattgcggaaacgttctggactcagctggaagaattcgctaac
tattgtttcaataagtcgcatgccgcttgttatggtttgattgcctattggacggcttat
ttgaaggcacattatcctgacgcgtttatggcggcgcttatgaccagcgaccatgatgac
actgatcgtctggcaattgaaatcactgagtgtaagcacatgggaattagtgtgctgagt
cctgatataaatgaatcattcgttgaatttgctgtggtgccgaatgagaataaaattcgt
ttcggaatgtcggcggtgaagggtgttggtgttggtgcggtcgaggaagttctgcgggcg
cgtgaagatggtccgtttacgtcggttgaggattttgctaggcgcgtttcaaccagcaag
ttcaacagaaaagcctgggagtcgcttattaagtctggtgcgtttgatgatatgggcgat
cgatctgatttgctattcaatctggattctattacgtcatttgcgtccaagctccaaaaa
gaagccgccagtgggcagacaaacttattcggaatgttgggtggcgatgacgcagcgagc
gtacaatcgactcttcatctccagaaggctcctgtgaaacacgacgataaagagcgctta
atgtgggagcgggaactgctggggctgtatatttcggcgcatccgcttgatagatatgaa
acatatttgagcgagcaaactcaaccattgacgcaattagttcctgagtacgatagtcga
atgatgacggtcggaggaattattagcaccgttcgtacaattgtcacaaaaagcggttcg
aagatggcgttcgtaggaattgaggataaattcggcgagggcgaaataattgtctttccg
aatctgtatgaaaaagttggcgctaagctggttcaggacgcagtaattcgagtttctggt
aagaattcagctcgagatcgtgacggaaatctgggtaatgaaagtaaactaattgccgat
gacattattgtgattacggataacgatatcaatggctatgagtcgactggccgtaaaatg
gatgcgccaaaaattagctctgccgttaaaaaagagcgccgtgaagcttatcgtaatcag
aaaaatggaatttctccgaagtctgccgtaaagaatgatgccgccaaaccacagccaaaa
actcattcggcgcctgttaatgttgcgccagaaattcccgcttcaaagttatttgtgtat
attaaagacccgaatgatcattcgcgtttggtgaaaatgaagtctgtttgcggcgagaat
gctggcacgactgatgtggttttggtgctgggcgagaaagaaaaatcagccatgcgcctg
ccgtttaaggtggatgccaatgacaatttattaagccaattaaaaaacactctgggtgaa
gagtgtgtagttctaaagtga
DBGET
integrated database retrieval system
