Candidatus Nanosynbacter sp. HMT-352: LR957_03420
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Entry
LR957_03420 CDS
T09649
Name
(GenBank) type IV secretion system protein
Organism
nanh
Candidatus Nanosynbacter sp. HMT-352
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Paralog
Gene cluster
GFIT
Motif
Pfam:
TrbL
Motif
Other DBs
NCBI-ProteinID:
UHA57343
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Position
complement(641031..643910)
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AA seq
959 aa
AA seq
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MKVFMFIEKQVIKKVGRLKKPIIILCAFALFILPITNILLAHPALASKDPSRFSNLKEND
QYKFFTYASAMAQCFNGGLQVHTDVDDQMLHDNVVFASWGNAYVYVGTYPEVKGFNKGGI
KCNDTGFQQEAFNTFGISPNELLCYMGYPKNGLKGKNDSNTKHEECVALGLTNDFTYNGM
PENGKENFLNALTTLTGYDRNVAEKNAYIKYRKYSDWIKGCVDGEATSKSDNTWKVSVIN
TDTKKVDTIYKPKGKTEYLYAGGSTVYANKPEFSCRSVESELAIAAKKYLNVLKASAVDT
ACAGLAGDKLKACKDGANHKGDSTYCETTYENTEDINACKQGQTAKIEAPAEGDGEEEKN
SCGIDGIGWLVCPVMNFVAGINDAAYSAISGFLDIKPAILSDGNNSGAKQGWEFFRNIAN
AIFAVIFLWIIFSQISNVGVSNYGIKKILPRLIIGALLVNLSYYLCQIFVDLSNILGHTL
KDALESGAGEIGANSEATGLGSEIIAKILGLTGAGLFIALAVGLPTLAAGFLAIMTVFII
LVVRQAGIILLIAMSPMAFAAWLLPNTEDLFKKWIKMFRGLLLVFPIISLLYGAGKLAGA
VLASNATVDPNNPDETMQLVALAATTMPLIATPFVLQNSLSSLGSIGAKIGKMSANAHSR
FAGNVKGTAKRRVDNSVIGDTKRKYSDFMDRRRASSRTGKIATWRDNTPLGKFMGWDKGG
ARARATVAKAFESDVEDASTMLQGMTSSEIAAIAITGKTSDDKEVSRSMRAATIDHTMAN
GGFEQRMNVLSKLKGTDASIKQRAIKAAFAKGDNNILGNGFGDDILKDEINSMEDLSNMA
VNNAESGSLQAEHLVQNGAATGWLSKAIADSKNERASAAFKKAGEVAVSNPNTAKNINQT
ISDALSAHGVVVENTSQNTSSSNSQQSPQNNQQSNSSSGGIIIATSQEDVRKALEDSRR
NT seq
2880 nt
NT seq
+upstream
nt +downstream
nt
atgaaggtgtttatgtttattgagaagcaggtgattaaaaaggtggggcgactcaagaag
cctattataattttatgtgcgtttgcgctctttatattaccgataacaaatattttatta
gcccatcccgcgttagcttcaaaagacccgagcaggtttagtaatctaaaagagaatgac
caatacaagttcttcacgtacgcctctgctatggcacaatgcttcaatggtggtttacag
gtgcacactgacgttgatgaccagatgttgcatgataatgtagtattcgcgtcgtggggg
aatgcttatgtttatgtaggtacatatccagaagtaaaggggtttaataagggtggaata
aaatgcaatgatacaggatttcagcaagaggcttttaatacatttggaatttcaccaaat
gagttactgtgctatatgggctacccaaagaacggtttaaaaggaaagaatgatagtaat
acaaaacatgaagaatgtgttgccttaggattaactaacgatttcacctataatggtatg
cctgagaatggcaaagagaattttttaaacgcgcttacgacattaacaggatatgatcgc
aacgtagcagaaaaaaacgcttacataaaatatagaaaatattcagactggattaagggt
tgtgtggatggtgaagcaaccagtaagtctgacaacacatggaaggtttctgtcattaac
acagacactaaaaaggttgatacgatatacaagccaaaaggcaaaactgaatacttgtat
gccggaggatctaccgtatatgctaataagcctgagttttcatgtagatcagttgaaagt
gaactggcaattgcagctaaaaaatatttaaatgttctaaaagcaagtgcagtagatact
gcctgtgcaggactggcaggagacaaactcaaagcctgcaaagacggagcaaatcacaag
ggtgattctacatactgcgaaacaacctatgagaacacagaagatataaacgcctgtaaa
caaggtcagactgccaaaattgaagccccagcggaaggtgacggagaagaagagaaaaat
tcgtgtggtattgatggaatagggtggttggtttgtccagtaatgaacttcgtggccggt
atcaacgatgctgcgtatagtgctatttccggatttttagatataaagccagccatactc
tccgatggaaataattctggagcaaaacaaggttgggagtttttccgtaatatagccaac
gccatattcgctgtaatattcttatggattatattttctcaaatctctaacgttggcgtt
agtaattatggcattaagaaaatcctacctcgcttaataataggagctttactagttaat
ttatcttattatctttgtcagatttttgtagacttatctaatatattagggcatacatta
aaggacgccttagaatctggagcgggagagataggtgccaattctgaggctacgggacta
ggcagcgagataattgctaaaatattaggcttaaccggagcaggcctattcattgcctta
gcagtcggattacctactcttgctgctggatttttggcaattatgacagtatttattatt
ctagtagttagacaagcaggtatcatactattaatagccatgtctcccatggccttcgca
gcatggctactgccaaatacagaagacttatttaaaaaatggataaaaatgttccggggg
ttattattagtatttcctataatatctttattgtacggggcaggaaaattagctggtgca
gtattggcatcaaatgcaacagttgatccgaataatccagacgaaaccatgcagctagtt
gctttagcagccaccactatgccactcatcgccactccttttgtattgcaaaactcctta
agttcgctaggtagtattggtgcaaagataggaaaaatgagtgctaatgcccacagtcga
ttcgccggaaatgtaaaaggcacagcaaaaagacgtgttgacaattctgttattggcgat
acgaaaagaaaatattcagacttcatggatagaagacgcgcaagcagtcgaacgggtaaa
attgcgacatggagggataatactccactcggtaaattcatgggctgggataaaggtgga
gcacgcgcccgcgcaactgtagctaaggcgttcgaaagcgacgttgaagacgcatccaca
atgctacaaggtatgacatcgagtgaaatagctgctatcgccataacgggtaaaacctct
gatgataaagaagtctcacgaagtatgcgtgcagccacaatagaccatactatggctaat
ggtggttttgaacaacgtatgaatgtgctgagtaaactaaaaggcacagacgcttctata
aaacaacgggcgattaaagctgcatttgcaaagggagataataatatactaggtaacgga
ttcggagatgatattctcaaggatgagattaatagtatggaagatctatctaacatggca
gtaaataatgccgagtctggaagtctacaggcagaacacttagtgcagaatggagcagca
accggatggctatctaaagctattgccgatagtaagaatgaaagagcttcggctgcattt
aaaaaagcaggagaagttgccgtatcaaatccaaatactgcgaaaaatataaatcaaaca
atatccgatgcgttaagtgctcacggagtggttgtcgagaatacgtcacagaatacatct
tcctctaattctcaacaatcaccacaaaataaccaacagagcaacagtagctctggggga
ataattattgctacatctcaagaagatgtaagaaaggcattagaggattctagacgatga
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