Neisseria animaloris: NCTC12227_00119
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Entry
NCTC12227_00119 CDS
T06907
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
nani
Neisseria animaloris
Pathway
nani03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nani00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC12227_00119 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nani03019
]
NCTC12227_00119 (rne)
03009 Ribosome biogenesis [BR:
nani03009
]
NCTC12227_00119 (rne)
Enzymes [BR:
nani01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
NCTC12227_00119 (rne)
Messenger RNA biogenesis [BR:
nani03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NCTC12227_00119 (rne)
Ribosome biogenesis [BR:
nani03009
]
Prokaryotic type
rRNA processing factors
NCTC12227_00119 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Zn_ribbon_InsA
dnstrm_HI1420
Motif
Other DBs
NCBI-ProteinID:
VEJ20414
UniProt:
A0A3S4YG21
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All DBs
Position
1:complement(142658..145537)
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AA seq
959 aa
AA seq
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MKRMLFNATQAEELRVAIVDGQTLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDY
GTDRHGFLPFKEVSRSYFQDYEGGRARIQDVLKEGMEIIVQVEKDERGNKGAALTTFISL
AGRYLVLMPNNPRGGGVSRRIEGEERQELKAAMAELDVPRGMSLIARTAGIGRSVEELQW
DFNYLQQLWQAIEEAGRAHNEPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQISE
FMSYVMPNNVGRLKLYQDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSID
VNSARATRGADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENAKHQRDVENVL
RDALKKDRARVQMGKLSRFGLLELSRQRLKPALGESSHIACPRCAGTGVIRSIESTALHV
LRIVQEEAMKDNTGEVHAQVPVDVATFLLNEKRAELFGMEERLDVSVFLIPNIHLENPHY
EVTRVRTDDVDENAEPSYKRVAAPEEDENAKPFGGDKAKATRPEPAVKGVKHTQPAPIVN
TPSAQASWWSNFKNWLGKIFGTSAAEEKTADSEKTEKRSAGGRQNARRSSNRRNHPRRGQ
NVKRQDTDGDKAETENKAVKLTEEKDNSGRSNRRNQNDNSRERSGRQSQSSDEDRRNDAV
QTEEAENSRNERQSGQSDRRRRNSRPEEKTTAAPSAAVETADTAAEPQVADINEAEVPAE
STSDSNENRNNRRRNGRNRDQRDQRERRNNTKKRNIPSAAKIEQYLSIEETGNKVRFAVA
HIFGKEIETPVSIPVAAPLADTSIVESKDDAPLVVVVPQQDENEPTPLLFAIEDDLDDTL
PVASHTEQDFVIQAIDNVEQAVAEIVGVPPFESVVPSEPETVTTVAAIVETAEVTPLQPA
VDNLDLGGLILVQTRAEALKAAVSQIQPETVNGLRRSDVPKAVETDISDLPMVQIETRQ
NT seq
2880 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtatgttatttaatgccacgcaggccgaagagctgcgcgtggcgattgtcgac
gggcaaacgctgctcgatctcgacattgaaacgctgggtaaagaacagcgcaaaggtaat
atctacaagggtatcatcacccgcatcgaaccgtcgctggaagcgtgtttcgtcgattac
ggcaccgaccgacacggttttctccccttcaaagaagtctcccgttcctatttccaagac
tatgagggcggccgcgcccgtatccaagatgtgctgaaagaaggcatggaaatcattgtt
caggttgaaaaagacgaacgcggcaacaaaggtgcggcgctcaccacttttatcagcctg
gccggccgctatctcgtactgatgccgaacaacccccgcggcggcggcgtatcgcgccgt
atcgaaggcgaagaacgtcaagagttgaaagccgctatggccgaattggacgtaccgcgc
ggcatgagcctgatcgcacgcaccgccggcatcggccgcagcgtggaagagctgcaatgg
gacttcaactacctgcaacaactgtggcaggccatcgaagaagccggccgtgctcacaac
gagccttacctactctttatggaaagctcgctgcttatccgcgccatccgcgactacttc
cgccccgacatcggcgaaattttggtcgataaccaagaagtgtacgaccagatttccgaa
tttatgtcgtatgtgatgcccaacaacgtaggccgtctgaaactctatcaagaccacact
ccgctgttttcgcgtttccaaatcgaacaccaaatcgaaagcgcattttcgcgtagtgtc
agcctgccttccggcggcgcgattgtgatcgatcacacagaggcactggtttccattgat
gtcaactctgcccgcgccacccgcggtgcagacatcgaagacaccgccttcaaaaccaat
atggaagccgccgaagaagtggcccgccaaatgcgtttgcgcgacttgggcggcttggtg
gtaatcgacttcatcgatatggaaaacgccaagcatcagcgcgatgtggaaaacgtgctg
cgcgatgccctcaaaaaagaccgggcacgcgtgcaaatgggcaaattgagccgcttcggc
ctgcttgaactttcccgtcaacgcctgaagcctgcattgggcgaaagcagccatatcgcc
tgcccgcgttgcgccggcaccggcgtaatccgcagcatcgaatcaaccgccctgcatgtg
ttgcgcatcgttcaggaagaagccatgaaagacaacaccggcgaagtgcacgcgcaagtg
ccggttgatgtggccacgttcctgctcaatgaaaaacgcgccgagcttttcggtatggaa
gaacgtttggacgtatccgttttcctaattcccaacatccacctcgaaaacccgcactac
gaggttacccgtgtgcgtaccgacgatgtagacgaaaacgccgagccaagctacaaacgc
gtggccgcaccggaagaagacgaaaacgccaaacctttcggcggcgataaagccaaagct
acccgtcccgaaccggccgtaaaaggcgtaaaacatacccaacccgctccgattgtaaac
actccgtccgctcaagcatcgtggtggagcaatttcaaaaactggctgggtaaaattttc
ggcacttccgcggcagaagaaaaaacagccgattccgaaaaaaccgaaaaacgcagcgca
ggcggccgtcagaacgcgcgccgttcttccaaccgccgcaaccacccgcgccgcgggcaa
aatgtcaaacgtcaagatactgacggcgataaagccgaaacggaaaacaaagccgtcaaa
ttgacggaagaaaaagacaacagcggccgtagtaaccgccgtaatcaaaatgacaacagc
cgtgaacgtagcggccgtcaaagccaaagctcagacgaagaccgccgcaacgatgcagtc
caaacggaagaagctgaaaacagccgcaacgaacgccaaagcggacaatcggaccgtcgc
cgccgcaacagccgccccgaagaaaaaaccaccgctgctccttcagccgccgttgaaact
gccgatactgcggcggaacctcaagttgccgatataaacgaagccgaggtacctgctgaa
agcacatccgactcgaatgaaaaccgtaacaaccgccgacgcaatggccgcaaccgcgac
caacgtgatcagcgtgaacgccggaacaatactaaaaaacgcaatattccgtctgcagca
aaaatcgaacaatatttgagtatcgaagaaacgggtaacaaggtgcgttttgccgtagcg
catatttttggcaaggaaatcgaaactccggtttccattcctgttgccgctccactggca
gatacctccattgtcgaatccaaagacgatgcaccgctggtggttgtggttccgcagcag
gacgaaaacgaacccacacccttattgttcgccattgaagatgacctcgacgacacgctt
cccgttgcctctcatacagaacaggattttgtgatacaggccatcgataatgtggaacag
gccgttgccgagatcgtgggcgtaccgccttttgagtctgttgtaccctcggaacctgaa
accgtaacaaccgtagccgcaattgtcgaaacggctgaagttacacccttgcagcctgcc
gtggacaacttggatttaggcggcttgattttggtacaaacccgtgccgaagcattaaaa
gcagccgtatcccaaatccagcccgaaacggtaaacggcttgcgtcgctcggatgtccct
aaagccgttgagaccgacatttcggatctaccgatggttcagattgaaacgcgtcaataa
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