Neisseria animaloris: NCTC12227_01049
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Entry
NCTC12227_01049 CDS
T06907
Symbol
vacB
Name
(GenBank) ribonuclease
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
nani
Neisseria animaloris
Pathway
nani03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nani00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC12227_01049 (vacB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nani03019
]
NCTC12227_01049 (vacB)
03016 Transfer RNA biogenesis [BR:
nani03016
]
NCTC12227_01049 (vacB)
Enzymes [BR:
nani01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
NCTC12227_01049 (vacB)
Messenger RNA biogenesis [BR:
nani03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NCTC12227_01049 (vacB)
Transfer RNA biogenesis [BR:
nani03016
]
Prokaryotic type
tRNA degradation factors
NCTC12227_01049 (vacB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
VEJ21322
UniProt:
A0A448UBT6
LinkDB
All DBs
Position
1:complement(1133494..1135878)
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AA seq
794 aa
AA seq
DB search
MKKNFKSFSLREKDPFLSRERQRYENPLPSREWITELLEREGVPLKIFSLAQKLSITDKE
YEFFERRIKAMARDGQVLINRRGAVCAADKLALVKCRVEAHKDGFGFAVPLIPTGNGDFV
LYERQMRGLMHGDIVTVRPAGMDRRGRREGQVLDIVERAQKEVVGRFYVERGIAILEPED
QRLIQSIVLEPDSLTAFQPEQGQVVVAEIESYPDGHRPAVAKLIEVLGNYADSGMEIEIA
VRKHHLPHEFSEACQKAARKIPDHVQERDLEGRVDLRELPLVTIDGETARDFDDAVYAEK
IGRNYRLVVAIADVSHYVRPDDPIDVDAEERATSVYFPRRVIPMLPENLSNGICSLNPDV
ERLCMVCDMVITYAGNIKEYKFYPAVMRSQARLTYTQVWDWIEKGGDYPHKQQIDTLYKL
FKILHAKRNQRGAVEFESTETQMIFDGNGKIERIVPVVRNDAHKLIEECMLAANVCAAEF
LLKHKHKALFRNHLGPTIEKLAALREQLGLLGLHLGGGDQPAPKDYALLAEQFSQRPDAE
LLQVMMLRSMQQAVYEPNNEGHFGLAYDAYAHFTSPIRRYPDLTVHRAIKAVLKGEKYTP
KSWQALGVHTSFCERRADDASRDVENWLKTYYMRDKIGEVFSGRISGMANFGIFVTLDDI
HIEGMIHISDLGEDYFNYRPELMAMQGERSGIRFNMGDRVTVKVARADLDTSRIDLNLIS
GGEVPAKRGKKKKDVSATVSPEKGGVKKSRSNTKSAETKAVSRKQGKSGKNARNEKAVKS
KARSSSAGKRNRKK
NT seq
2385 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaaaattttaaatcattcagtttacgtgagaaagacccttttttgagcagagaa
cggcagcgttatgaaaatcctttgccaagcagggagtggattaccgaattattggagcgg
gaaggtgtgccgctcaaaattttctcattggcacaaaaattatcgattaccgataaagaa
tacgagttttttgaacggcgtattaaagcaatggcgcgcgacggccaagtattgattaac
cgccgtggtgcagtatgtgctgcagataaattggccttggtgaaatgccgggttgaagcg
cataaagacggtttcggttttgcagtacctttaattccgaccggtaacggtgattttgtg
ctttatgaacgccaaatgcgcggtttgatgcatggggacattgttacagtgcgccctgcg
ggtatggatcggcgggggcggcgtgaaggtcaggttttggatattgtcgagcgggcgcag
aaagaggtggtagggcggttttatgtggagcgcggtattgcgattttggagcctgaagac
cagcggctgattcaaagtattgtgcttgagcccgacagtttaacggcatttcagcccgaa
caagggcaggttgtggtggcggaaattgaaagttatcccgacgggcaccgtcctgcagtg
gctaaattgatcgaagtgttgggtaactatgccgacagcggcatggaaattgaaattgcc
gtacgtaaacatcatttgccgcatgaatttagcgaagcatgccaaaaagccgcccgaaaa
attccggatcatgtacaagagcgtgatttggaagggcgggtggatttgcgagagttgccg
ttggtaaccatagacggggaaacggcacgcgatttcgatgatgcggtttatgcggaaaaa
atcggccgcaattaccgtttggtagtggcgattgccgacgttagccattatgttcgtccg
gatgatccgattgatgttgatgctgaagagcgtgcgaccagtgtttattttccgcgccgc
gtcattccgatgcttcccgaaaatttgtctaacggtatttgttcgttgaaccccgatgtc
gaacgcttgtgtatggtgtgcgatatggtaattacttatgcgggaaatatcaaagaatat
aagttttatcctgcggtaatgcgttcgcaagcgcgtttgacttacactcaagtatgggat
tggatagaaaaaggcggcgattacccgcacaaacaacaaatcgatactttatataaactg
tttaaaattctgcatgccaaacgtaaccagcgcggtgcggtcgagtttgaaagcactgaa
acgcagatgatttttgatggtaacggtaaaatcgagcggattgtgccggtggtgcgtaac
gatgcgcataagctgattgaggagtgtatgctcgcagcaaatgtgtgtgcggcggagttt
ttattgaagcataagcataaggcattgttccgtaatcatttgggcccgaccatcgaaaag
ttggctgctttacgcgagcagctcggtttgcttggtttacatttgggaggaggcgatcag
cctgcacctaaggattatgcgctactggcggagcagttcagtcaacgccccgatgccgag
cttttgcaggtgatgatgttgcgttctatgcagcaggcggtttatgagccgaataacgaa
ggccatttcggattggcttatgatgcctatgcccattttacatcgcccatccgccgttat
ccggatttgaccgtccaccgtgcgattaaggccgtcttaaaaggtgaaaaatatacaccc
aaatcatggcaggctttgggcgtgcatacttcgttttgcgaacgccgcgccgatgatgcc
agccgtgatgtggaaaattggctgaaaacttattatatgcgcgataaaatcggcgaagtt
ttcagtgggcgtatctccggtatggccaacttcggtatctttgtaacgcttgatgatatc
cacatcgaaggcatgattcacatcagtgatttgggcgaagattatttcaactaccggccc
gaactcatggcaatgcagggcgagcgcagcggtattcgctttaatatgggcgaccgcgta
acggtaaaagtggcgcgtgccgacttggataccagcaggattgatttgaatctgatcagc
ggcggggaagtgcctgccaaaagaggtaaaaagaaaaaagacgtttcggcgacggtatct
cctgaaaagggtggagttaaaaaatctcgcagcaatacgaagtcggcggaaaccaaagcg
gtaagcagaaaacagggaaaatccggaaaaaatgcccggaacgagaaagcggtgaagagt
aaagcccgaagcagctctgccggtaagcgcaaccgtaagaaataa
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