Nannocystis poenicansa: O0S08_11305
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Entry
O0S08_11305 CDS
T08663
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
nann
Nannocystis poenicansa
Pathway
nann03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
nann00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
O0S08_11305 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nann03400
]
O0S08_11305 (ligD)
Enzymes [BR:
nann01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
O0S08_11305 (ligD)
DNA repair and recombination proteins [BR:
nann03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
O0S08_11305 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
WAS96727
LinkDB
All DBs
Position
complement(2987655..2989499)
Genome browser
AA seq
614 aa
AA seq
DB search
MLPQLATPASTLPRGPGWVYEAKFDGYRVLARIDGDEVALYTRNGNDWTARMLPLRGELA
ALGLESAWLDGEITVLDPRGRPDFQRLQQAFDGDGSRDIVYFVFDLLYLRGHDLRRVPLV
ERRRLLEQVLGAARPGEHVRYSETLAGPVDRLLADACKRGLEGLIGKRADSLYTSARSPS
WIKLKCTQRQEFVVGGYSDPKGSRAGFGGLLLGVHDEQGRLVYAGKVGTGFDAALLRSIH
AKLRAIEADRSPFHVRPREVKGHWVRPVLVAEVSFSEWTSDGRVRHPVFQGLRSDKDPAT
IVRERPREVESTSLPKARRSASPIKVKHPERVIDPSSGATKLDLVRYYETVAEHMLPHLE
GRPLAMVRAPTGVAGEQFFQKHSENTRIPGVRELSASLRPGHPRMLEIASNEGLVAAAQM
NVIEFHTWNSTAADIEHPDRVIFDLDPGEGVAWESLRDAAQLTRGLLELLGLRSFLKTSG
GKGLHVVVPLRPAWSYDPVKNFSRDVAEHLASTLPKLFVAKSGAHNRRGRIFVDYLRNGR
TATTIAAFSARVRPGLGVSVPVAWSELGRLTAGDQWNIFSVPARLRALRGDPWAGYRDDQ
TLVAAAEQLGRTKH
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
ttgctgccccagctcgccacccccgcctccaccctgccccgcggccccggctgggtctac
gaggccaagttcgacggctatcgcgtcctcgcgcgcatcgacggcgacgaggtcgcgctt
tacacccgcaacgggaatgactggaccgcgcgcatgctgccattgcgcggcgagctcgcg
gcgctcggcctcgagtccgcctggctcgacggcgaaatcacggtactcgatcccaggggc
aggccggactttcaacggttgcagcaggcgttcgacggcgacggcagccgcgacatcgtc
tatttcgtgttcgatctgctctacctgcgcggccacgacctccggcgcgtcccgctggtc
gagcgccgtcggctcctcgaacaagtcctcggcgccgcgcggccgggcgagcacgtgcgg
tacagcgagacgctcgcgggccctgtcgatcgcctgctcgcggacgcttgcaagcggggc
ctcgaggggctcatcggcaagcgcgccgacagcctctacacctccgcgcggtcgccctcg
tggatcaagctgaaatgcacgcagcgccaggaattcgtcgtcggcggttattccgatccg
aagggcagccgggcgggcttcggcggcctgttgctcggcgtgcacgacgaacagggccga
ctcgtctacgccggcaaggtcggcaccggattcgacgccgcgctgttgcggtcgatccac
gcgaagttgagggcgatcgaggccgaccgctcgcccttccacgtccggccgcgagaggtc
aagggacactgggtgcggcccgtgctcgtcgccgaggtgtcgttcagcgagtggacgagt
gacggccgcgtgcgccacccggtgtttcaggggctgcggtcggacaaggatccggcgacg
atcgtgcgcgagcggccgcgagaggtcgagtcgacgagcctgccgaaggcgcgccggtcc
gcgtcgccgatcaaggtcaagcacccggagcgcgtcatcgatccgtcgagcggagcgacc
aagctcgacctggtccgctattacgaaactgtcgccgagcacatgctgccccacctcgag
ggccgcccgctcgccatggtccgcgcgccgaccggcgtcgccggcgagcagttctttcaa
aaacactccgagaacacccggatcccgggggtgcgggagctcagcgcgtccctgcgtcct
ggtcacccgcgaatgctggagatcgccagcaacgagggcctcgtggccgccgcgcagatg
aacgtgatcgagtttcacacgtggaactcgaccgccgcggacatcgagcacccggaccgc
gtcatcttcgatctcgacccgggcgaaggtgtcgcctgggagtcgctccgggacgcagcg
cagctcacgaggggcctcctcgagctcctcggcctgcgcagcttcctcaagacgagcggc
ggcaagggcctccacgtggtggtgccgctgcggccggcgtggtcgtacgaccccgtgaaa
aacttctcgcgcgacgtggcggagcacctggcctccaccctgcccaaactgttcgtggcg
aagagcggcgcgcacaaccggcgcggccgcatcttcgtcgactacctgcgcaacggtcgg
actgcgacgacgatcgccgcgttctcggcccgggtgcggccgggcctcggcgtcagcgtg
ccggtcgcgtggtccgagctgggccggctcaccgccggcgaccagtggaacatcttcagc
gtccccgcgcgactgcgggcgctgcgtggcgacccctgggccggataccgcgacgaccag
acgctcgtggccgcggccgagcagctcgggcggacgaagcattga
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