Nannocystis punicea: O0S08_43425
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Entry
O0S08_43425 CDS
T08663
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
nann
Nannocystis punicea
Pathway
nann03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nann00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
O0S08_43425 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nann03021
]
O0S08_43425 (rpoC)
03400 DNA repair and recombination proteins [BR:
nann03400
]
O0S08_43425 (rpoC)
Enzymes [BR:
nann01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
O0S08_43425 (rpoC)
Transcription machinery [BR:
nann03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
O0S08_43425 (rpoC)
DNA repair and recombination proteins [BR:
nann03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
O0S08_43425 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Apocytochr_F_C
TyeA
Motif
Other DBs
NCBI-ProteinID:
WAS93067
LinkDB
All DBs
Position
complement(11318652..11322854)
Genome browser
AA seq
1400 aa
AA seq
DB search
MRDIFSFFEKQKEATYFNALRIGVASPKTIRDWSYGEVKNPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRMKHRGVVCEKCGVEVIHSKVRRERAGHIDLATPVAHIWFLKSL
PSRIGNILDIPLTKLEKVLYCEAYIVIDPKDSGLEERELLSEERFDQLMEELGPEAFNAG
MGAEAIKELLSRIDPVVEARNLRAEIAGATSEAKRKKAAKRLRVVEAFRNSGNKPEWMML
EVVPVLPPDLRPLVPLDGGRFASSDLNDLYRRVINRNNRLKRLQELAAPEIIIRNEKRML
QEAVDALFDNGRRGKTITGPNKRPLKSLSDMLRGKSGRFRQNLLGKRVDYSGRSVIVVGP
ELRLHEVGIPKKMALELFKPFIYNRLEAQGLVTTIKSAKRMVEKEAPEVWDILDEVIKEH
PLLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHLPLCIESQME
ARVLMMSTNNILSPAHGRPIIVPSQDIVLGLYYMTRERAFAHGGVNENPAQDGFFIGHFG
SPAEVRMAYDHGAAHLQARVRVRMEPGKPMLDSTVGRVLLYEGGIPKKIPFPMVNRSLGK
KELNELIDTCYRLCGQKATVLMADYLRSTGYSEATKAGISICMDDMVIPEAKKKLLQQAT
AEVKRIMAQYADGLITSGERYNKIIDIWANVSEQIANAMMEGISTAVLTDERTGKQVKQP
SFNSVYIMADSGARGSRQQMRQLAGMRGLMARPSGEIIEFPITTNFREGLTVLQYFISTH
GARKGLADTALKTANSGYLTRRLVDVAQEAVITEFDCGTIQGLDMTALVESGEVIERLAD
RVLGRVALEPLYRPGTDDLIIAEGDLIDETRARQVDDAGIQSVKIRSVLTCEALRGICAK
CYGRDLARGNMVDVGEAVGIIAAQSIGEPGTQLTMRTFHIGGVGNITAEQSQLAARFGGT
VKLEDIELVTGREDKDGPYSVVMNRHAQLNLLDEKGRPRERYDLVYGARLRVKDGEVVKA
GQLMAEWDPFTLPIIVEVTGTVEYGDIIEGVTMAVRVDETTQHSSMVVQESRDPDARPRF
VIKNDDGEVIRVHGKHEARYFLPVGAAFTLTEGTKVVAGDVIAKLPRESTKTKDITGGLP
RVVELFEARTPKDHAIISEIDGVVTFGKDKGGKRRVIVTAEHGDPKEYLVPKVRHLLVRE
GDRVRAGEKLMDGPANPHDILAVLGEKALATYLLDEIQEVYRLQGVKINDKHIEVIVRQM
MRRVRIKDPGDTNFLADDHVERQIFQQENQRVAALGGTPATGQALLLGITKASLSTESFI
SASSFQETTKVLTEAALQGKIDFLRGLKENVIMGRLIPAGTGLTVYDRLHMVSDDQAQHD
PNAEPIARRSNERDLINVQD
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
atgagagacatcttcagtttcttcgagaagcagaaagaggccacctacttcaacgcgctc
cggatcggcgtcgcctcgccgaagaccatccgcgactggtcgtacggggaggtcaagaac
cccgagacgatcaactaccggaccttcaagcccgagcgcgacggcctgttctgcgccaag
atcttcgggcccatcaaggactacgagtgcctctgcggcaagtacaagcgcatgaagcac
cgcggggtcgtgtgcgagaagtgcggcgtcgaggtcatccactccaaggtccggcgtgag
cgcgcgggtcacatcgacctggcgactccggtcgcgcacatctggttcctcaagagcctg
ccgtcgcgcatcggcaacatcctcgacatcccgctgaccaagctcgagaaggtcctctac
tgcgaggcctacatcgtcatcgacccgaaggactccgggctcgaggagcgcgagctgctc
agcgaggagcgcttcgaccagctgatggaggagctcggccccgaggcgttcaacgccggc
atgggcgccgaggcgatcaaggagctgctgtcgcgcatcgacccggtggtcgaggcccgc
aacctgcgggcggagatcgccggcgccaccagcgaggccaagcgcaagaaggcggccaag
cgcctgcgcgtggtcgaggccttccgcaacagcggcaacaagcccgagtggatgatgctc
gaggtcgtgccggtgctgccgcccgacctgcgcccgctcgtgccgctcgacggcggccgc
ttcgccagctccgacctcaacgacctgtatcgccgggtgatcaaccgcaacaaccggctc
aagcgcctgcaggagctggctgcgccggagatcatcatccgcaacgagaagcgcatgctg
caggaggccgtcgacgcgctgttcgacaacggccgccgcggcaagacgatcacgggcccc
aacaagcgcccgctgaagtcgctgtcggacatgctgcgcggcaagtcgggccggttccgc
cagaacctgctcggcaagcgcgtcgactactccggccgcagcgtcatcgtcgtcggtccc
gagctgcgcctgcacgaggtcggcatccccaagaagatggccctcgagctgttcaagccg
ttcatctacaaccggctcgaggcgcaggggctcgtcaccaccatcaagagcgccaagcgg
atggtggagaaggaggccccggaggtctgggacatcctcgacgaggtgatcaaggagcac
ccgctgctgctcaaccgcgcgccgacgctccaccgcctcggcatccaggcgttcgagccg
gtgctgatcgagggcaaggcgatccagctgcacccgctggtctgcaccgccttcaacgcc
gacttcgacggcgaccagatggccgtccacctcccgctgtgcatcgagtcgcagatggag
gcgcgcgtgctgatgatgtcgaccaacaacatcctcagccccgcgcacggccggccgatc
atcgtgccgtcgcaggacatcgtcctcggcctgtactacatgacgcgcgagcgggccttc
gcccacggcggcgtcaacgagaacccggcgcaggacggcttcttcatcggtcacttcggc
tcgccggccgaggtgcgcatggcctacgaccacggcgccgcgcacctgcaggcccgcgtc
cgcgtgcgcatggagcccggcaagccgatgctcgacagcaccgtcgggcgcgtcctgctg
tacgagggcggcatccccaagaagatcccgttcccgatggtcaaccgctcgctgggcaag
aaggagctcaacgagctgatcgacacctgctaccgcctgtgcgggcagaaagccaccgtc
ctgatggccgactacctgcgcagcaccggttacagcgaggcgaccaaggccggcatctcg
atctgcatggatgacatggtcatccccgaggccaagaagaagctgctccagcaggcgacc
gccgaggtcaagcgcatcatggcgcagtacgcggacggcctcatcacctcgggcgagcgc
tacaacaagatcatcgacatctgggcgaacgtctccgagcagatcgccaacgcgatgatg
gagggcatctcgaccgccgtcctcaccgacgagcggaccgggaagcaggtcaagcagccg
tcgttcaactcggtctacatcatggccgactcgggcgcccgcggttcgcggcagcagatg
cgccagctcgccggtatgcgcggcctcatggctcgtccctcgggcgagatcatcgagttc
ccgatcacgaccaacttccgcgagggcctcaccgtcctccagtacttcatctcgacgcac
ggcgcgcgcaagggcctcgccgacaccgcgctcaagaccgcgaactccgggtacctcacc
cgccgcctggtcgacgtcgcccaggaggccgtgatcacggagttcgactgcggcacgatc
cagggcctcgacatgaccgcgctggtcgagtcgggcgaggtcatcgagcgcctggcggac
cgcgtcctcggccgcgtcgcgctcgagccgctgtaccggccgggcaccgacgacctcatc
atcgccgagggcgacctcatcgacgagacccgcgcgcgtcaggtcgacgacgccggtatc
cagtcggtgaagatccgcagcgtgctcacctgcgaggcgctgcggggcatctgcgccaag
tgctacgggcgcgacctggcccgcggcaacatggtcgacgtcggcgaggcggtcggcatc
atcgccgcccagtcgatcggcgagcccggcacgcagctgacgatgcgcacgttccacatc
ggcggcgtcggcaacatcaccgccgagcagtcgcagctggcggcccgcttcggcggcact
gtcaagctcgaggacatcgagctcgtcaccggccgcgaggacaaggacggcccgtactcg
gtggtcatgaaccgccacgcccagctcaacctgctcgacgagaagggccgcccgcgcgag
cgctacgacctggtctacggcgcgcggctgcgcgtcaaggacggcgaggtggtcaaggcc
ggccagctgatggccgagtgggacccgttcaccctgccgatcatcgtcgaggtgacgggc
accgtggagtacggcgacatcatcgagggcgtgaccatggcggtgcgggtcgacgagacc
acgcagcactcgagcatggtcgtgcaggagagccgcgaccccgacgcgcgcccgcgcttc
gtcatcaagaacgacgacggcgaggtcatccgcgtccacggcaagcacgaggcgcgctac
ttcctgccggtcggcgcggccttcaccctcaccgagggcacgaaggtggtcgccggcgac
gtcatcgccaagctgccgcgcgagtcgaccaagaccaaggacatcacgggcggtctgccg
cgcgtggtcgagctgttcgaggcgcgcacgccgaaggatcacgcgatcatctcggagatc
gacggcgtcgtcacgttcggcaaggacaagggcggcaagcggcgcgtcatcgtcaccgcc
gagcacggcgacccgaaggagtacctggtacccaaggtccgccacctgctcgtgcgcgag
ggcgaccgcgtgcgcgccggcgagaagctgatggacggccccgccaacccgcacgacatc
ctcgcggtgctcggcgagaaggcgctggcgacctacctgctcgacgagatccaggaggtc
tatcgcctgcagggcgtgaagatcaacgacaagcacatcgaggtcatcgtccggcagatg
atgcggcgcgtgcggatcaaagatccgggcgacaccaacttcctcgccgacgaccacgtc
gagcggcagatcttccagcaggagaatcagcgcgtcgcggcgctcggcggcacgccggcg
accggtcaggcgctgctgctcggcatcaccaaggcctcgctgtcgaccgagagcttcatc
agcgcctcgtcgttccaggagaccaccaaggtgctcaccgaggcggcgctgcagggcaag
atcgacttcctgcgcggcctcaaggagaacgtgatcatgggccggctcatccccgccggc
accggcctcacggtctacgaccgcctgcacatggtctcggacgaccaggcgcagcacgac
ccgaacgccgagccgatcgcccgtcgctccaacgagcgggacctcatcaacgtgcaggac
tga
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integrated database retrieval system
