Nannocystis punicea: O0S08_46355
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Entry
O0S08_46355 CDS
T08663
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
nann
Nannocystis punicea
Pathway
nann02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
nann00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
O0S08_46355 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nann03021
]
O0S08_46355 (rpoD)
Transcription machinery [BR:
nann03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
O0S08_46355 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
Sigma70_ner
TMPIT
HTH_20
Motif
Other DBs
NCBI-ProteinID:
WAS93610
UniProt:
A0ABY7H3E5
LinkDB
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Position
12067705..12069552
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AA seq
615 aa
AA seq
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MTPSKTRTVDREKLKKQLIAFGKKKGHVTYDELHELLPPDLIDPEELSEWERTLQDEGVQ
VIAGEAAAKEAAKPKLATRKVMPKRDEDPEDEPSRTNDPVRMYLRKMGSVSLLTREGEVE
IAKRIEQGEMRVLEIALASPVSVPYILEMFDRIKRGQIRAKDVLNISNPAEAGPGALPMS
NDPTALNQEAAMENLGKQVERIRRHQKELDRVKLILAVDTKKAVVVAVNEPPTPPLDDKA
REAHAKAGEEHKRQILEAIQDMKLGRRPIDGIVGELTLLVERVARAEKDLIQCERRAGMD
LKELRKLFKDVRLSEEEEFKLCRRLGLHPSELHEIEARMKLAIKRIRAVEQETNMRAPQL
RELHEQLMTARRQAEKAKAELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDK
FEYKRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRSLVQELGREP
TPEEIAEKMELPLDKVRKVLKIAKEPISLETPIGEEEDSHLGDFIEDKNMISPTDAVINM
NLADQTRRVLATLTPREEKVLRMRFGIGESSDHTLEEVGQDFSVTRERIRQIEAKALRKL
RHPSRSKRLKAFVEN
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgacccccagcaagacgcgcaccgtggaccgtgagaagctcaagaagcagctcatcgcc
ttcggcaagaagaagggccacgtcacctacgacgagctccacgaactcctgccgcccgac
ctgatcgaccccgaggagctgagcgagtgggagcgcacgctgcaggacgagggcgtccag
gtcatcgccggcgaggccgcggccaaggaggcggccaagcccaagctggcgacgcgcaag
gtcatgccgaagcgcgacgaggacccggaggacgagccctcgcgcaccaacgaccccgtc
cgcatgtacctgcgcaagatgggcagcgtctcgctgctcacccgcgagggcgaggtcgag
atcgccaagcgcatcgagcagggtgagatgcgggtcctcgagatcgcgctcgcctcgccg
gtctcggtcccctacatcctcgagatgttcgaccgcatcaagcgcggccagatccgggcc
aaggacgtgctcaacatctccaacccggccgaggccggccccggcgcgctgccgatgagc
aacgacccgaccgccctcaatcaagaggcggcgatggagaacctcggcaagcaggtcgag
cgcatccgccggcaccaaaaagagctcgaccgcgtcaagctcatcctcgccgtcgacacc
aagaaggccgtcgtcgtcgccgtcaacgagccgcccaccccgccgctcgacgacaaggcc
cgcgaggcccatgccaaggccggcgaggagcacaagcgccagatcctcgaggccatccag
gacatgaagctcggccgccgccccatcgacggcatcgtcggcgagctcaccctcctcgtc
gagcgcgtcgcccgggccgagaaggacctcatccagtgcgagcgccgggccggcatggac
ctcaaggagctgcgcaagctcttcaaggacgtccgcctgtccgaagaggaagagttcaag
ctgtgccgccgcctcggcctccacccctcggagctgcacgagatcgaggcccgcatgaag
ctggccatcaagcgcatccgcgcggtcgagcaagagaccaacatgcgcgcgccccagctg
cgcgagctgcatgagcagctgatgaccgcccgtcgccaggccgagaaggccaaggccgag
ctggtcgaggcgaacctccgcctggtggtgtcgatcgccaagaaatacaccaaccgcggc
ctgcagttcctcgacctgattcaggagggcaacatcggcctgatgaaggccgtcgacaag
ttcgagtacaagcgcggctacaagttcagcacctacgcgacgtggtggatccggcaggcc
atcacccgcgcgatcgcggaccaggcccgaacgatccgcatcccggtccacatgatcgag
acgatcaacaagctgatccgcaccagccggtctctcgtccaggagctcggccgcgagccc
acgccggaagagatcgccgagaagatggagctgccgctcgacaaggtccgcaaggtcctg
aagatcgccaaggagcccatctccctcgagacccccatcggcgaggaagaggactcgcat
ctgggcgacttcatcgaggacaagaacatgatctcgccgacggacgcggtcatcaacatg
aacctcgccgaccagacccgccgcgtcctcgccaccctcacgccgcgcgaagagaaggtc
ctccgcatgcgcttcggcatcggcgagtcgtccgaccacaccctcgaagaggtcggccag
gacttctccgtcacccgcgaacgcatccgccagatcgaagccaaggccctccgcaagctg
cgccacccgtcccgcagcaagcgcctcaaggccttcgtcgagaactga
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