Nocardioides anomalus: G5V58_01340
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Entry
G5V58_01340 CDS
T07000
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
nano
Nocardioides anomalus
Brite
KEGG Orthology (KO) [BR:
nano00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nano03019
]
G5V58_01340 (hrpA)
Enzymes [BR:
nano01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
G5V58_01340 (hrpA)
Messenger RNA biogenesis [BR:
nano03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
G5V58_01340 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
NACHT
SLFN-g3_helicase
nSTAND3
ResIII
T2SSE
AAA_30
AAA_24
ABC_tran
AAA_16
AAA_23
NTPase_1
SRP54
Motif
Other DBs
NCBI-ProteinID:
QIG41594
UniProt:
A0A6G6W8P0
LinkDB
All DBs
Position
249879..253637
Genome browser
AA seq
1252 aa
AA seq
DB search
MSTEQLAISYPAELPVSQRRDDIAAAIRDHQVVVVAGETGSGKTTQLPKICLELGRGRHG
MIGHTQPRRIAARSVAERIASELDTELGDLVGYQVRFTDRTSKRSRVKLMTDGILLAELQ
RDRELKRYDTIIIDEAHERSLNIDFLLGYLKRLLPRRPDLKLIITSATIDVDRFAAHFDA
PVVEVSGRTYPVEVRYRPLMELPEDDDEGEPIVRDQTEAVVDACRELFAEGPGDILVFLP
GEREIRDTADALSELADARTEVVPLYSRLSAAEQHRVFAAHTGRRIVLATNVAETSLTVP
GIRYVVDTGVARISRYSVRTKVQRLPVEAISQASANQRSGRCGRLGPGVAIRLYSEEDFE
GRPAFTDPEILRTNLASVILQMTSLGLGDIARFPFVEPPDRRNVTAGVQLLEELGAFNSS
GRLSRLGRRLARLPIDPRLARMVLEAERRGCLREVIVIAAALSLQDPRERPAELQAQADQ
QHARFKAEGSDFLTWLNLWRYVKEQQRELSSSAFRRMCKREFLNYLRVREWQDFESQLRQ
VCKEMDIELGHPADTPDADGIHQSLLAGLLSQIGLLEERDRKERGPREYLGARGARFAVF
PGSGLYRKNPPFLMAGELVETSRLWARQNAAIKPEWAEDLGRHLVKRTWSEPHWSKKRAA
VMAYERVTLYGVPLVADRLTTYARVDPVVSRELFLRHALVQGEWHSRHRFLETNRRLLEE
AEELEHRARRRDIVVDEETLFDFYDARVPADVVSGAHFDQWWKGARRSAPDLLTFDPAML
TRSSADAVTEADYPEQWDSGEEGLTFSISYHFEPGAAEDGLTIDVPVDTLNRVEADDFSW
NVPGLREELVTALIRSLPKHLRVSFVPAPNKAREFLAAVPPGEEPLLDALERWMRSTTGV
VVPREAWDWSKVPAHLQPTYRVVADDGAEQARGKDLEALKAPLRPQFESALSSAASESGL
ARTGETRWVFGDIPESETLTRAGHRVTVFPALVDEGASVGLAVYGTTDEAEARHRLGVRR
LVLLSVPLPSDSELQEPLALNDRLGLVGSPYASVPELLVDSRAAVVGGLVDAGGQVRSEP
DFDALVARARAAAPGMLHDFLADVLRVLDGWRTVDKLLSGRAEMAMLPALSDLKAQLVRL
VHPGFLSEAGPGQLRRYPTYLRAMTLRREALDQGGAAVNRDRQLMDRITGLQDAYLHQLA
ALPDGRPPGERLRRARWMLEELRVSLWAQQLGTAHPVSEERVRKALSAAAGT
NT seq
3759 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccgagcagctcgcgatcagctaccccgccgagctcccggtcagccagcgccgc
gacgacatcgccgcggccatccgcgaccaccaggtcgtcgtcgtcgcgggcgagaccggc
tcgggcaagacgacccagctgcccaagatctgcctggagctgggtcgggggcgccacggg
atgatcggccacacccagccgcgccggatcgccgcgcggtccgtggccgagcggatcgcc
tccgagctggacacggagctgggcgacctggtcggctaccaggtccgcttcaccgaccgg
acctcgaagcgctcgcgcgtgaagctgatgaccgatggcatcctgctggctgagctgcag
cgcgaccgcgagctgaagcgctacgacacgatcatcatcgacgaggcgcacgagcgctcg
ctcaacatcgacttcctgctcggctacctcaagcggctgctgccacgccggcccgacctc
aagctgatcatcaccagcgcgaccatcgacgtggaccggttcgccgcacacttcgacgcg
cccgtggtcgaggtgagcgggcggacgtacccggtcgaggtccgctaccgccccctcatg
gagctgccggaggacgacgacgagggcgagccgatcgtccgcgaccagaccgaggccgtc
gtcgacgcctgccgtgagctgttcgccgaggggccgggcgacatcctggtcttcctgccc
ggtgagcgcgagatccgcgacaccgccgacgcgctgagcgagctcgcggacgcgcgcacc
gaggtcgtgccgctctactcccgactgtccgcggccgagcagcaccgcgtcttcgcggcg
cacaccggacgccggatcgtgctggcgaccaacgtggccgagacctcgctgaccgtgccc
ggcatccggtacgtcgtggacaccggcgtcgcgcgcatctcgcgctactcggtgcgcacc
aaggtgcagcggctcccggtcgaggcgatcagccaggcctcggccaaccagcgctcgggc
cgctgcggccggctcgggccgggggtggcgatccggctgtactccgaggaggacttcgag
gggcgaccggcgttcaccgaccccgagatcctgcgcaccaacctggccagcgtcatcctg
cagatgacctcgctggggctcggcgacatcgcgcggttcccgttcgtcgagccgccggac
cggcgcaacgtcaccgccggcgtgcagctgctggaggagctgggggcgttcaactcttcc
ggaaggctgtcgcggctggggcggcggctcgcccggctgcccatcgacccgcggctcgcg
cggatggtgctggaggccgagcgccgcggctgcctgcgcgaggtcatcgtcatcgctgcg
gcgctgtcgttgcaggacccgcgcgagcggccggccgagctccaggcccaggccgaccag
cagcacgcccgcttcaaggccgagggctcggacttcctcacctggctcaacctgtggcgc
tacgtcaaggagcagcagcgcgagctgtcgtcgtcggcgttccggcggatgtgcaagcgc
gagttcctcaactacctgcgggtgcgcgagtggcaggacttcgagtcccagctgcgccag
gtctgcaaggagatggacatcgagctggggcacccggcggacacccccgacgccgacggc
attcaccagtcgctgctggccgggctgctctcccagatcgggctgctcgaggagcgcgac
cgcaaggagcgcggaccgcgggagtacctcggcgcccgtggcgcgcggttcgcggtcttc
cccggcagcgggctctaccggaagaacccgccgttcctcatggccggcgagctcgtcgag
acctcgcggctctgggcgcggcagaacgccgccatcaagccggagtgggccgaggacctc
gggcggcacctggtgaagcggacctggtcggagccgcactggtccaagaagcgcgcggcc
gtgatggcctacgagcgggtcacgctgtacggcgtgccgctggtggccgaccggctcacg
acgtacgccagggtcgacccggtcgtctcgcgcgagctgttcctgcgccacgcgctggtc
cagggcgagtggcactcgcggcaccggttcctggagaccaaccggcgcctgctggaggag
gccgaggagctcgagcaccgcgcgcggcgccgcgacatcgtggtcgacgaggagacgctg
ttcgacttctacgacgcgcgggtgccggccgacgtggtctccggcgcgcacttcgaccag
tggtggaagggcgcacggcgcagcgcgccggacctgctgaccttcgacccggccatgctc
acccgctcctcggcggacgcggtcaccgaggcggactaccccgagcagtgggacagcggc
gaggaggggctgaccttctcgatcagctaccacttcgagccgggcgcggccgaggacggc
ctgaccatcgacgtgcccgtggacaccctcaaccgggtcgaggccgacgacttctcctgg
aacgtgcccggcctccgcgaggagctggtcaccgcgctcatccggtcgctgcccaagcac
ctgcgcgtctcgttcgtgccggcgcccaacaaggcgcgggagttcctggccgccgtgccg
ccgggcgaggaaccgctgctcgacgcgctcgagcggtggatgcgctcgaccaccggtgtc
gtcgtgccgcgtgaggcgtgggactggtccaaggtgcccgcccacctgcagccgacctac
cgcgtggtcgccgacgacggcgcggagcaggcgcgcggcaaggacctcgaggcgctcaag
gcgccgctgcgcccgcagttcgagtctgccctctcctcggccgcctcggagtccgggctc
gcgcgcaccggcgagacccggtgggtcttcggcgacatccccgagtccgagacgctgacc
cgggccgggcaccgggtgacggtcttccccgcgctggtcgacgagggcgcgtcggtgggg
ctcgcggtctacgggaccaccgacgaggccgaggcgcggcaccgcctcggcgtacgacgc
ctggtgctgctctcggtgcccctgccctcggactccgagctccaggagccgctggccctg
aacgaccggctggggctcgtcggctcgccgtacgcctcggtgccggagctgctggtggac
agccgggccgcggtggtcggtggcctcgtcgacgctggtggacaggtccggtccgagcct
gacttcgacgccctggtggcgcgggcgcgcgccgccgccccggggatgctccacgacttc
ctcgccgacgtgctgcgggtgctcgacgggtggcggaccgtcgacaagctgctgagcggg
cgcgccgagatggcgatgctccctgcgctctcggacctgaaggcgcagctcgtgcgcctg
gtgcacccggggttcctctccgaggccggtcccgggcagctgcgccgctacccgacctac
ctccgggcgatgaccctgcgccgggaggcgctcgaccagggtggcgcggcggtcaaccgc
gaccgccagctgatggaccggatcaccggcctgcaggacgcctacctgcaccagctcgcc
gccctgcccgacggccgcccacccggtgagcggctgcgccgggcccgctggatgctcgag
gagctgcgggtctcactgtgggcccagcagctcggcaccgcccacccggtcagcgaggag
cgggtccgcaaggcactgtccgcggcggcgggcacgtga
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