Nocardioides anomalus: G5V58_22355
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Entry
G5V58_22355 CDS
T07000
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
nano
Nocardioides anomalus
Pathway
nano03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nano00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G5V58_22355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nano03019
]
G5V58_22355
03009 Ribosome biogenesis [BR:
nano03009
]
G5V58_22355
Enzymes [BR:
nano01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
G5V58_22355
Messenger RNA biogenesis [BR:
nano03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
G5V58_22355
Ribosome biogenesis [BR:
nano03009
]
Prokaryotic type
rRNA helicases
G5V58_22355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
HEM4
AAA_22
CMS1
UvrA_inter
adh_short
Motif
Other DBs
NCBI-ProteinID:
QIG45139
UniProt:
A0A6G6WIT8
LinkDB
All DBs
Position
complement(4490333..4492021)
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AA seq
562 aa
AA seq
DB search
MSTDQTFADLGLSEAVLGAVSSVGYETPSPIQAATIPPLLAGRDVVGLAQTGTGKTAAFA
LPVLSRLDLEQKEPQALVLAPTRELAVQVAEAFERYAEQVGGVRVLPIYGGQGYGVQLSA
LRRGVHVVVGTPGRIMDHLDKGTLDLSRIRFLVLDEADEMLNMGFAEDVERILADTPAEK
QVALFSATMPKQIRRLAETYLDDPAEIQVEATTRTSSTVRQRYLVVSYPQKLDALTRILE
VESFEAVIVFVRTKNETETLAEKLRARGFSAVAINGDVPQPVRERTVAQLRSGELDVLVA
TDVAARGLDVQRISHVVNYDIPTDTESYVHRIGRTGRAGREGDAISFVTPRERYLLRHLE
KANGVALELMALPSVDDVNSTRLTRFDDAITEALAQQQRVDFFRDVVAHYVREHDVPELD
VAAALAAVLQGDEPLLLDAEPERPERPVRDRDPKPGDGFATYRIDVGRKHRVEPRQIVGA
LANEGGLNRRDFGAITIRSDFSLVELPAELSGETWGRLQNTRIGGRPIKLRQDSGRPGRP
HRAGDAPPAGQQGKKPRHKKDR
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
gtgagcaccgaccagaccttcgccgacctcggcctgtccgaggccgtgctgggtgcggtc
tccagcgtcggctacgagacgccgtcgcccatccaggccgccaccatcccgccgctgctg
gccgggcgcgacgtggtcgggctggcccagaccggcaccggcaagaccgcggccttcgcg
ctgccggtgctgtcccggctcgacctggagcagaaggagccgcaggcactggtgctggcg
ccgacgcgcgagctggcggtgcaggtggccgaggccttcgagcggtacgccgagcaggtc
ggcggcgtgcgggtgctgcccatctacggcggccaggggtacggcgtgcagctgagcgcg
ctgcgccgcggcgtgcacgtcgtggtgggcacgccggggcggatcatggaccacctcgac
aagggcaccctcgacctctcgcggatccggttcctggtcctcgacgaggccgacgagatg
ctcaacatgggcttcgccgaggacgtcgagcggatcctggccgacaccccggccgagaag
caggtcgcgctgttctccgcgaccatgcccaagcagatccggcggctggccgagacctac
ctcgacgacccggccgagatccaggtcgaggccacgacccggacgtcgtcgaccgtgcgc
cagcgctacctggtcgtctcctacccccagaagctcgatgcgctcacccgcatcctcgag
gtcgagtccttcgaggcggtcatcgtcttcgtgcggaccaagaacgagaccgagaccctg
gccgagaagctgcgcgcccgcggcttcagcgcggtggccatcaacggcgacgtgccgcag
ccggtgcgggagcggaccgtggcccagctgcgcagcggcgagctcgacgtgctcgtggcc
accgacgtcgcggcccgcggcctcgacgtgcagcgcatcagccacgtcgtcaactacgac
atcccgaccgacaccgagtcctacgtgcaccgcatcggccgcaccggtcgtgccggtcgc
gagggcgacgcgatctccttcgtgaccccgcgcgagcgctacctgctgcgccacctggag
aaggccaacggcgtcgcgctcgagctgatggcgctgcccagcgtcgacgacgtcaacagc
acccgcctcacccgcttcgacgacgccatcaccgaggcgctcgcccagcagcagcgggtc
gacttcttccgcgacgtggtggcgcactacgtccgcgagcacgacgtccccgagctcgac
gtcgcggccgcgctggccgcggtcctgcagggcgacgagccgctgctgctcgacgccgag
ccggagcgccccgagcgcccggtgcgcgaccgcgaccccaagccgggcgacggcttcgcg
acgtaccgcatcgacgtgggccgcaagcaccgcgtcgagccgcggcagatcgtcggtgcg
ctggccaacgagggcggcctcaaccgccgcgacttcggggccatcaccatccgctcggac
ttctccctcgtcgagctcccggccgagctgtccggagagacctggggacggctgcagaac
acccgcatcggcgggcgtccgatcaagctgcgccaggactccgggcgccccggccgtccg
caccgcgccggcgacgcgccacccgcgggccagcagggcaagaagccccgccacaagaag
gaccggtga
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