Nocardioides anomalus: G5V58_23375
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Entry
G5V58_23375 CDS
T07000
Name
(GenBank) DEAD/DEAH box helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
nano
Nocardioides anomalus
Pathway
nano03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nano00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G5V58_23375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nano03019
]
G5V58_23375
03400 DNA repair and recombination proteins [BR:
nano03400
]
G5V58_23375
Enzymes [BR:
nano01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
G5V58_23375
Messenger RNA biogenesis [BR:
nano03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
G5V58_23375
DNA repair and recombination proteins [BR:
nano03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
G5V58_23375
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Pribosyltran
RecQ_Zn_bind
Cas3-like_C_2
DUF3325
HEM4
Motif
Other DBs
NCBI-ProteinID:
QIG45299
UniProt:
A0A6G6WJ96
LinkDB
All DBs
Position
4692242..4694347
Genome browser
AA seq
701 aa
AA seq
DB search
MTTAAQDDVQSDVRQEAERHLRALVGRDDATLREDQWRAIEALAVQRARALVVQRTGWGK
SAVYFVATLLLRAQGAGPTVIVSPLLALMRNQIAAAERAGIRAVTINSTNMQDWEPIHDQ
IRAGEVDVLLVSPERLNNPGFRDEVLPRLAATCGLLVVDEAHCISDWGHDFRPDYRRIRT
LLGELPAGIPVLATTATANARVTKDVAEQLGTDVLVLRGSLDRESLRLGVVRLRTPEQRL
AWLADHLAEQPGVGIIYCLTVAATQEIADYLRSRGHDVAAYSGQTEATERHALEQDLAAG
RVKALVATSALGMGFDATLGFVVNMGAPQSPVAYYQQVGRAGRGTDEATVVLLPAIEDRD
IWAYFASLAFPPEAQVRQTLEVLAAEGAPLSTAALESRVELTRNRLETMLKVLDVDGAVR
RVRGGWESTGQPWSYDAERYQRVREAREREQAAMLAYLDTTECRMRYLREQLDDPDAADC
GRCDNCGGLTLATTVSAAAIEEAETRLARPGVPVEPRKMWPTALAALGIDLKGRIAADEA
AGEGRAIARLTDLGHGQSLRALFRPETPDGPVPVPLVQAVLRVLDDWRPEVDAIVVVESA
TRPTLTEDLAAGLSRRLGVPVVGHWAIVDPDVAPSQGAVNSAQRVAAAGRRASLHAEVPA
GARVLLVDDLVVTGWTLTLAARAIRRAGAADVLPLTLAVQS
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atgaccaccgcagcccaggacgacgtccagagcgacgtccgccaggaggccgagcggcac
ctgcgcgcgctcgtgggccgcgacgacgccaccctgcgcgaggaccagtggcgcgcgatc
gaggcgctcgccgtgcagcgcgcccgggcgctggtcgtgcagcggaccgggtggggcaag
tcggcggtctacttcgtggccacgctgctgctgcgcgcccagggcgccgggccgacggtg
atcgtgagcccgctgctggccctgatgcgcaaccagatcgcggcggccgagcgcgccggc
atccgcgcggtgaccatcaactcgaccaacatgcaggactgggagccgatccacgaccag
atccgcgccggcgaggtcgacgtgctgctggtgagccccgagcggctcaacaacccgggc
ttccgcgacgaggtgctgccgcggctggccgcgacctgcggcctgctggtggtcgacgag
gcgcactgcatctccgactggggtcacgacttccggcccgactaccgccggatccgcacc
ctgctcggcgagctgcccgccggcatcccggtgctcgccaccacggccaccgccaacgcg
cgggtgaccaaggacgtggccgagcagctcggcaccgacgtcctcgtcctgcgcggctcg
ctggaccgcgagtcgctgcgactcggcgtggtccggctgcgcacgcccgagcagcggctg
gcctggctggccgaccacctggccgagcagcccggcgtcggcatcatctactgcctcacg
gttgcggccacccaggagatcgcggactacctgcgctcgcgcgggcacgacgtcgcggcg
tactccggccagaccgaggccaccgagcgccacgccctcgagcaggacctcgccgccggc
cgggtcaaggcgctggtggccaccagcgcgctcggcatgggcttcgacgccaccctcggc
ttcgtggtcaacatgggcgccccgcagtcgccggtggcctactaccagcaggtcggccgc
gcgggccgcgggacggacgaggcgaccgtggtgctgctgcccgcgatcgaggaccgcgac
atctgggcctacttcgcctcgctggccttcccgcccgaggcgcaggtccgccagaccctc
gaggtgctggccgcggagggcgcaccgctcagcacggcggccctggagagccgggtcgag
ctcacccgcaaccggctcgagaccatgctcaaggtcctcgacgtcgacggagcggtgcgc
cgggtccgcggcggctgggagtcgaccggccagccgtggagctacgacgccgagcgctac
cagcgcgtgcgcgaggcccgcgagcgcgagcaggctgcgatgctggcctacctcgacacc
accgagtgccggatgcgctacctgcgcgagcagctggacgaccccgacgccgccgactgc
gggcgctgcgacaactgcggcggcctcaccctggcgaccaccgtgtccgccgccgccatc
gaggaggccgagacccggctggcccggcccggcgtgcccgtcgagccgcgcaagatgtgg
cccaccgccctggccgccctgggcatcgacctcaagggccgcatcgccgccgacgaggcc
gccggtgagggccgcgcgatcgcccgcctcaccgacctcggccacggtcagtcgctgcgc
gcgctgttccggcccgagacgcccgacggccccgtgccggtcccgctcgtccaggccgtg
ctgcgcgtcctcgacgactggcgccccgaggtcgacgccatcgtggtggtcgagtccgcc
acccggcccaccctcaccgaggacctggccgccggcctgtcccgccgtctcggggtgccg
gtcgtcggccactgggccatcgtcgaccccgacgtcgcccccagccagggtgcggtcaac
tccgcccagcgggtggccgccgccggtcgccgcgcctcgctgcacgccgaggtgcccgca
ggggcccgggtgctgctcgtggacgacctggtggtcaccggctggacgctcacgctggcc
gcccgggccatccggcgcgcgggcgccgccgacgtgctcccgctcacgctcgccgtccag
agctga
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