Candidatus Nanosynbacter sp. TM7-008: LRM48_000815
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Entry
LRM48_000815 CDS
T10994
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
nant Candidatus Nanosynbacter sp. TM7-008
Pathway
nant03410
Base excision repair
nant03430
Mismatch repair
nant03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nant00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LRM48_000815 (recJ)
03430 Mismatch repair
LRM48_000815 (recJ)
03440 Homologous recombination
LRM48_000815 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nant03400
]
LRM48_000815 (recJ)
DNA repair and recombination proteins [BR:
nant03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
LRM48_000815 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
LRM48_000815 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LRM48_000815 (recJ)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
PIGA
Motif
Other DBs
NCBI-ProteinID:
XRW97964
LinkDB
All DBs
Position
154246..155874
Genome browser
AA seq
542 aa
AA seq
DB search
MTLFEKILAARGLTTRAAREEFLHPNYVSVKHDPFLLPDMRKAVDRLKKAHAEGEKIVIY
GDYDIDGLSATAILLDAFGKFGFKEVGAFIPNRFVEGYGMTMGAVDKVRNMGADLIVTVD
TGSLCHAEIEYASSLGIDTVVTDHHNVAETPPPSIAAVNPKFPGHKYPFRDLCGAGVAFK
LVQALQTELNGLPDGYEKWLLDLVALGTVCDIVTLADENRANVYWGLEVLKKQRRPGLKA
LMSVAGIDPEKVNARHLGFGLGPRMNAAGRLETAQYALDMLTASDGLEALEASEKLEELN
IKRRSIQDEIFDEACQQADNMTDDRVLVVNSDNWNHGVIGIVASKLVEKYKKPVFIIGER
GDEATGSARSFGDFSAADAVRAADDIIIKGGGHGAAAGVTLATERIDDFRRRVNEFYDSL
QLKNQELYLLPRADVEIDDFSEINEELIDNLAKMEPFGNGNAEPILKITEATVLNVRRMG
ADGQHVKLTLRDKNDVALQMLAFNAPEEFFREVGDEVSAWFQPTVNEWQGMRSVEGRLLH
LA
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atgacattatttgagaaaattttagcggctcgaggcttgactacgcgtgcggcgcgtgag
gaatttttacatccgaattacgtgtcagtaaaacacgatccgtttttattgccagatatg
agaaaagctgtggaccgcttgaaaaaggcgcatgctgagggtgagaaaattgttatttat
ggcgattacgatattgacgggctgagtgcaacggcaattttattggatgcgtttggtaag
tttggctttaaggaagttggcgcatttattccgaaccggtttgttgagggctacggaatg
acgatgggtgccgttgataaggtgcgaaatatgggcgcggatttaattgtcacggttgat
acgggaagtttgtgtcatgcggaaattgaatatgcgtcgagtttggggattgatacggtg
gtgactgatcaccataatgttgctgagactccaccaccgagtattgctgcggttaaccct
aagtttcctggtcataaatatcctttccgcgatttgtgtggtgcaggtgtggcgtttaaa
ctggtgcaagctctacaaactgaactgaacgggttgccggatggttacgagaagtggcta
ttggatctggtggcgctggggacggtttgcgacatagttacgttggcggatgaaaatagg
gcgaatgtctattggggcttggaggttttgaaaaagcagaggcgtcctggtttgaaggcg
ttgatgtcggtggcgggaattgatccagagaaggttaatgctagacatctgggatttggt
ctgggtccgcgaatgaacgcggcgggtaggctggaaacggcgcaatatgctctggatatg
ctgacggcgagtgacggactggaggcgttggaggctagtgaaaaattggaagaattgaac
attaagcgtcgcagtattcaggacgagatttttgacgaagcttgccagcaggcggacaat
atgactgatgatcgagttttggtagtgaatagtgacaattggaatcacggggttatcgga
attgtggcgtcaaagttggttgagaaatacaaaaagccagtttttataattggcgagcgt
ggcgacgaggctacgggttcggcgcgaagttttggtgatttttctgcggctgacgcggtt
cgtgcagctgacgacatcattattaaaggtggtggccacggagcggcggcgggcgtgacg
ctggcgaccgagagaattgacgattttaggcgacgagtgaatgagttttacgattcgctg
caattaaaaaatcaggaattatatttgttgccgagagctgacgttgagattgacgatttt
tcggaaattaatgaggagctgattgataatttggcgaagatggagccgtttggcaatggt
aacgcggagcctatattgaaaataactgaagcgacggttttaaatgtgaggagaatgggt
gcggatgggcaacacgtgaaattgaccttacgtgataaaaatgacgttgcgctgcaaatg
ctggcttttaatgcaccagaagaatttttccgtgaagtgggcgacgaagtgtctgcttgg
ttccagccgaccgtaaatgaatggcagggaatgcgatctgttgaggggcgattattgcat
ttggcttag
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