Candidatus Nanosynbacter sp. TM7-008: LRM48_002255
Help
Entry
LRM48_002255 CDS
T10994
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
nant Candidatus Nanosynbacter sp. TM7-008
Pathway
nant03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nant00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LRM48_002255 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nant03021
]
LRM48_002255 (rpoC)
03400 DNA repair and recombination proteins [BR:
nant03400
]
LRM48_002255 (rpoC)
Enzymes [BR:
nant01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LRM48_002255 (rpoC)
Transcription machinery [BR:
nant03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LRM48_002255 (rpoC)
DNA repair and recombination proteins [BR:
nant03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LRM48_002255 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Histone_HNS_N
Biotin_lipoyl_2
Biotin_lipoyl
Scm3
Motif
Other DBs
NCBI-ProteinID:
XRW97516
LinkDB
All DBs
Position
complement(409047..412880)
Genome browser
AA seq
1277 aa
AA seq
DB search
MANSAFNATGISDFDAVRLAVASPEDILKWSYGEVLKPETINYRTQKPERDGLFCERIFG
PVKDINPHDSKLKGVRSREAAVDKNGELVTKSIVRRERMGHIQLAVPVAHIWFMRGTPSA
MSQLLGMTVRNIEKIVYFATYVILNVDETTRDQYLADLEAETDLARKAIKIRYEKMAEED
GADVKQLAKEQSREVEELEEAYVGKKSQLESLNFGALISESEYRNLPEEYDELIEVGMGA
SAVKELLGKIELPKLIAELTEEVETAKGQRQKKLLKRLKMLESMESAGIKPSSLCMTVLP
VIPPDLRPMVALSGGRFATSDLNDLYRRIINRNNRLKKLIELNAPEVIQRNEKRMLQEAV
DALIDNSASRGRAVSSTGGRRSLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPKL
KINQCGLPKQMALELFKPFVISWLIKNEFAHNIRSASRLIEAGEAVVWDALDSAIEGKYV
LLNRAPSLHRLSIQAFQPVLVEGKAIQLHPLVCAGFNADFDGDQMAVHLPLSKEAQAEAR
ELMSATANLLKPADGAPVLHISQDIVLGNYYLTYDKPQAQTDKVKTYSSVYEAEMAYDNG
VIHLQTPIRIFAKGKMRETTLGRVFFNEILPEDFPYDNNVQTKKQLKKVLAQIFNKYGAE
ETAKIADRMKGQAFRFATVAAVSTGMTDYVHFEEIPQFVAEGDAKAALISEQFDQGLITE
EERYNLTVSAWRNVDNKITAFLKDQLAHMDTSISMMVNSGARGDISNVKLASAMIGVQMD
ATNHEIELPIRSSYTGGLSSLEAFIATRGARKGLIDTALKTADSGYLTRRLVDVAQDVFT
VEDTDGDDEGYAIYRSETEETMIDFSNRLAGRYAAETIPGHVNKNELITREIADSIDDDE
SIESVKIQSVLSTNNLNGIPQRSYGIDMSTGKLVGNHQPVGVIAAQSVGEPGTQLTLRTF
HNSGVAGGDITQGLPRVEELFEARTPKGQAFVTEVAGLVDVWEDGKKYIVQITPESGKVE
RLPLEGRTVVVKAGSSVKAGDVLATGESDTRPLIAPFDGVIESAEDTLVIAAEAASPTRY
EIPGNMQLVVKANDVVEAGDRLTAGSLNLHDLMRLKGVEATQRYIINEVLRIYAAQGQDV
ADKHLEIIVRQMFSRVQIEDAGDSEFVTGDIVSKAAVVNANKQLAAEGKNLISYTQLLLG
ITKVSIWSDSWLSAASFQDTTRVLINAAVSGRADHLHGLKENVIIGRKIPVGTGAIEEDE
EFETPSEDEFVEEEVAA
NT seq
3834 nt
NT seq
+upstream
nt +downstream
nt
atggcaaattctgcatttaacgcaacgggcatcagcgattttgacgcggttcgtttggcg
gtagctagcccagaagatattctgaaatggagctacggcgaagttttgaagccagaaaca
attaactatcgcacacaaaagccagagcgcgatggattgttctgtgagcgaatctttggt
ccagttaaggatatcaatccacacgactcaaagcttaagggtgtacgttcacgcgaagct
gctgtcgataagaatggtgaattggtcactaagtcaatcgttcgtcgtgagcgaatggga
cacattcaattggcagtgcctgttgcgcacatttggtttatgcgcggcactccaagcgca
atgagccagctgctcggcatgacggttcgcaatattgagaaaatcgtttactttgcaact
tacgtcatcttaaacgttgacgaaacaactcgtgatcaatatttggcagatttggaagcg
gaaactgatttggctcgtaaggctatcaaaatccgctacgaaaaaatggctgaagaagat
ggcgctgacgttaagcaactagctaaagagcagagccgtgaagttgaggagttggaggaa
gcttacgttggcaagaaatctcaattggagagcttgaatttcggtgctttgatctcagag
agcgaatatcgcaacttgccagaagaatatgacgaattgatcgaagttggtatgggtgct
agcgcggtcaaggaacttttgggcaagattgagttgccaaagcttatcgctgaattgaca
gaggaagttgaaaccgcaaaaggtcagcggcagaagaaattactaaagcgcttgaagatg
ctggagagtatggaatctgctggcattaagccgtcaagcctatgtatgactgttctgcca
gttattcctccagatcttcgcccaatggtggcgttgtctggtggccgatttgcgacatct
gacttgaatgatttgtatcgccgaattatcaaccgaaacaaccgcttgaagaagttgatt
gagcttaacgcgccagaagttattcagcgcaatgaaaagcgcatgcttcaggaagctgtt
gacgctttgattgacaattcagcatcacgtggtcgcgcagttagctcgactggtggtcgc
cgcagcttgaagagcttgagcgatatgctaaagggtaagcaaggtcgcttccgtcagaac
cttcttggtaagcgtgttgactattctggtcgctcggttatcgtggttggtccaaaattg
aagattaaccaatgtggtttgccaaagcaaatggcgctggaattgttcaaaccgttcgta
attagctggttgattaagaatgaatttgcgcacaatattcgctcggcttcacgtctaatc
gaagctggtgaagcggtagtttgggacgcgctagattcagcaattgaaggcaagtacgtg
ttgcttaaccgtgcaccaagtttgcaccgtttgtcaattcaagccttccagccagttttg
gttgagggaaaagctattcaattgcacccgctagtttgtgccggatttaacgccgacttc
gacggtgaccagatggctgttcacttgccactatcaaaagaggctcaggctgaagctcgt
gagttgatgagcgcaactgccaacttgttgaagcctgccgatggtgcgccagtgctgcac
atttcgcaggacatcgtgcttggtaactattacttgacttacgacaaaccgcaagctcag
actgataaggttaagacctacagctctgtttacgaagcagaaatggcttacgacaatggc
gtaattcacttgcaaaccccaattcgtatctttgcgaaaggtaaaatgcgtgaaacaact
ttgggtcgcgtcttcttcaatgagattctgcctgaagatttcccatacgataataatgtc
cagaccaagaagcagcttaagaaggtgttggcgcaaatctttaacaagtatggcgccgaa
gaaaccgctaagattgcagaccgtatgaagggtcaagctttccgctttgctacggttgcg
gctgtgtcgactggtatgaccgactacgtccactttgaggaaattcctcagtttgtggct
gaaggtgatgctaaggcagctttgatttctgagcaattcgaccaaggtttgattacagag
gaagagcgatacaacttgacggttagcgcatggcgaaacgtcgacaataagattacggcg
ttcttgaaagaccaattggcacacatggacaccagtatttctatgatggtcaactctggt
gctcgtggtgatatttccaacgtgaagttggcgagcgcgatgattggtgttcagatggac
gcaaccaaccatgagattgagcttccaatccgcagctcttacacgggcggtttgtctagc
cttgaggcctttatcgcaacccgtggtgcacgtaagggtcttattgacacggctcttaag
actgccgactcaggttacttgactcgtcgtttggttgacgttgcacaagatgtctttact
gttgaagataccgatggcgacgatgaaggttacgcaatttaccgatcagaaactgaagag
acgatgattgacttttcaaaccgtttggctggtcgttatgctgctgaaacaattccaggt
cacgtcaataagaacgagttgatcacgcgtgaaatcgcagattcaattgacgacgacgaa
agtattgaaagtgttaagattcagtctgtattgtcaacaaacaatcttaacggtattccg
cagcgaagttacggtattgatatgtcgactggtaaattggttggcaatcatcagccagtt
ggtgttatcgccgctcagtcagtcggtgagccaggcactcagttgacgcttcgtaccttc
cacaactctggtgttgctggtggtgacattacccaaggtcttcctcgcgttgaagagctg
tttgaagcccgcacaccaaagggtcaagcattcgttacggaagttgctggtttggttgac
gtttgggaagatggcaagaagtatatcgttcaaattacaccagaatctggcaaggttgag
cgattgccattagaaggacgaaccgttgtagttaaggctggctcaagtgttaaggctggc
gatgtcttggcaactggcgagagcgacactcgacctttgatcgcgccatttgacggtgtg
attgagtcggctgaggatactttggtgatcgcggcagaggctgcttcgccaactcgctac
gaaattccaggcaacatgcagttggtcgttaaggcaaacgatgttgttgaagctggtgat
cgattgacagctggatcgttgaacttgcacgatttgatgcgacttaagggtgttgaggca
actcagcgctacatcatcaacgaagttctgcgaatctacgctgctcagggtcaggacgtg
gctgacaagcacttggagattattgttcgccaaatgtttagccgcgtgcaaatcgaagat
gctggtgatagcgaattcgtgactggcgatatcgtttctaaggccgctgtggtcaatgca
aataagcaattggccgctgaaggtaagaacttgattagctacacacaattgctacttggt
atcacaaaggtgtcaatctggagtgactcatggctatcggctgcatccttccaagacact
actcgcgtcttgatcaatgctgctgtatctggtcgagccgaccacttgcacggtttgaag
gaaaacgtcatcatcggccgcaagattccagtaggaactggcgcaatcgaagaagatgaa
gaattcgaaacaccgagcgaagacgaattcgtcgaagaagaagttgctgcttaa
DBGET
integrated database retrieval system
