Candidatus Nanosynbacter sp. TM7-008: LRM48_002945
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Entry
LRM48_002945 CDS
T10994
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
nant Candidatus Nanosynbacter sp. TM7-008
Pathway
nant03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nant00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
LRM48_002945 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nant03400
]
LRM48_002945 (sbcB)
Enzymes [BR:
nant01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
LRM48_002945 (sbcB)
DNA repair and recombination proteins [BR:
nant03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
LRM48_002945 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LRM48_002945 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LRM48_002945 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
RNase_H_2
Raffinose_syn
Motif
Other DBs
NCBI-ProteinID:
XRW97641
LinkDB
All DBs
Position
complement(538880..540298)
Genome browser
AA seq
472 aa
AA seq
DB search
MAQTFFFYDLETSGLNPRQDRIMQFAGQRTDMDLQPIGEPYNILVTLNDDTLPSPDALMV
TGITPQKTVEEGYTEAQFARILSEEIFTPDTIAVGFNNIRFDDEFIRHLFWRNFYDPYEW
TWKDGRSRWDLLDVVRLTRALRPEGIEWPIDDKGEPSNRLELITKANGIEHENAHDALAD
VTALIAVAKLIKQNQPQMYDYLLKMRDKKLVQKLVNVDDKKPFVYASGRYDKEFAKTTVA
FPLTTSRNGGVIVYDLRYDPTPFVDLGVEELSAKIFATWEERQAEDFVKLPVKELQYNRC
PAVSPLGVLTQGDGWKKISLDAETVQKHQDILLSHPDFAERLRSIFENKPEFKKMTDPEA
QLYDGFLDNSDRVRVEAVRNAGERELADFHPDFQDERLSPLLLHYKARSFPNLLSEDELR
QWEEWRTGRLQAQMPQFMKSLQRLAPSATDEQQFILQELQLWLESVLPSVDA
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaaacatttttcttctacgaccttgaaactagcggtcttaatcctcgacaagat
cgaattatgcaatttgccggtcagcgaaccgatatggatttgcaaccgattggtgaaccg
tacaatattctcgtgacgctaaatgacgatacgctgccgagtcctgatgcgttgatggtg
acgggcataacgccgcaaaaaactgtcgaagaaggttataccgaggctcaatttgcgcgt
atattaagcgaggaaatatttacgcctgatacgattgctgttggttttaataatattcgt
tttgacgacgagtttattcgtcatttgttttggcggaatttttacgatccatacgagtgg
acttggaaagacggtcgatccaggtgggatttattggatgtggtgcgcttgaccagggcg
cttcgacccgagggaattgaatggccaattgatgacaaaggtgagccgagtaaccgtttg
gaactcatcacgaaagctaacggaatagagcatgaaaatgcacatgacgcgctggcggac
gtgaccgcgttgattgctgtggctaaattgattaagcagaatcagccgcaaatgtacgac
tatttgctgaaaatgcgcgataagaaattggtgcagaaactggtgaatgtcgatgataaa
aaaccttttgtttacgcgagtggtcgttatgataaagaattcgctaaaacaaccgtggct
tttccgctaactacgagccgaaatggtggcgtgattgtttatgatttgcgatatgatccg
acgccgtttgttgatctgggcgttgaggaattgtcggcgaagatatttgcaacgtgggaa
gaaaggcaagctgaggatttcgttaaattgccagttaaggaattgcaatataatcgttgc
ccggcagtttcgccacttggcgtgttgactcagggcgatggctggaagaaaatttctctg
gatgcggaaactgtgcagaagcaccaagatattttactttctcatccagactttgctgaa
aggttgcgtagtatatttgagaataagccagagtttaagaaaatgaccgatccagaagcg
caattatatgatgggtttttagataatagcgatcgagttcgtgttgaagccgtgcgtaat
gctggcgagcgcgagttggctgattttcatccagattttcaggatgagcgattgtcacca
ctattgctgcattataaagcgcgaagttttcctaatttgcttagtgaagatgaattgcga
caatgggaagaatggcgaactgggcgtttacaggcgcaaatgccgcaatttatgaaatct
ctgcagcgattggcgcctagtgcgactgacgaacagcagtttattttgcaagaattgcag
ttatggctggaatcggtcttgccttctgttgacgcctga
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