Candidatus Nanosynbacter sp. TM7-008: LRM48_003045
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Entry
LRM48_003045 CDS
T10994
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
nant Candidatus Nanosynbacter sp. TM7-008
Pathway
nant03420
Nucleotide excision repair
nant03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nant00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LRM48_003045
03430 Mismatch repair
LRM48_003045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nant03400
]
LRM48_003045
Enzymes [BR:
nant01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LRM48_003045
DNA repair and recombination proteins [BR:
nant03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LRM48_003045
MMR (mismatch excision repair)
Other MMR factors
LRM48_003045
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
AAA_11
AAA_22
ResIII
SgrR_N
PcrA_UvrD_tudor
Motif
Other DBs
NCBI-ProteinID:
XRW97661
LinkDB
All DBs
Position
complement(560473..562575)
Genome browser
AA seq
700 aa
AA seq
DB search
MSNFTDGLNSEQARAVTHADGPLLILAGAGSGKTKTLTHRIAYLIGELKIFPSRILAVTF
TNKAAKEMRQRLAQILGEDSENRQFMPWMGTFHSICVRMLRMDGENIGLNKRFLIYDTDD
QISLMKQIMKARGLTDKDIKPRAVLSAISNAKNEMRSAEDFSASTRGPREQKIAELFFAY
EKALKDASALDFDDLLIKTVELLRNKPDIRHKWQQQFEHILIDEYQDTNAVQYALIKLLV
NSRRNLCVVGDDAQSIYSFRGADYTNILNFERDFPGTTVVKLEQNYRSTGAILNMANALI
SHNIHRTDKNLWTANGDGVEPKLWQLYNESEEALAIANEIQAQIANGRQYGDVAVLYRTN
AQSYAIERALRQSYIPYKIVGGLRFLDRAVVKDLLAYLRLLYQPSDRVSFLRIVNTPKRG
VGAVSISKFLDWNDASGRDIISGLLMVEEADTLTARAKRPLLEFGQKLHDLQQEIDGSPA
ELIEKIMKSTGYEDFINDGTPQAEERMENIGVLLSEAKAYVDVATFLEEMALMSSTDTTA
DQQVTLMTLHAAKGLEFPVVFLAGLEEGILPHARVFDSGNADDVEEERRLCYVGVTRARE
ELFVSCASSRTQFGQIGYNMPSRFLDEMGLMAGGVDRPAQPIIEPDFYSEDIGLEVGDRV
RSPSFGSGEIIDSEGLSVTVQFDNGNIKKLNVEFARLEKI
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atgtctaattttactgacggattaaatagcgagcaggctcgagcggtaacgcacgctgat
gggccactgttgattttggctggagccggatctggaaagactaaaaccctgacccataga
attgcctatttgattggcgagttgaagatatttcctagtcgaatattggcggttacattt
actaataaggccgcgaaggaaatgcgtcagcgattggcgcaaatattgggtgaagattct
gaaaatcggcaatttatgccgtggatgggaacttttcacagtatttgcgtgcgaatgttg
cggatggatggtgaaaatattggcctgaacaagcgattcttaatttacgataccgacgat
caaataagcttgatgaagcagattatgaaggctcgcggcttgacggataaagatattaaa
cctcgagctgtactttcggctatttcaaacgctaaaaatgagatgagaagtgctgaggat
ttttcggcttcgactcgtggcccaagagaacagaaaatagctgagctgttttttgcttac
gaaaaagctttgaaagacgcttcggcgttggattttgacgatttattgataaaaactgtg
gaattattgagaaataagccggatatccgtcataaatggcagcagcaattcgagcatatt
ttgattgacgagtatcaggacacgaatgcggtgcaatatgcgctaattaagctgttggtt
aattcgcgtcgtaatttatgcgtggttggtgatgacgctcagtcgatttatagttttcgc
ggggctgattacactaatattctcaattttgagcgtgattttccaggtacgacggtggtt
aagttggagcaaaattatcgttcgactggcgcgattttgaatatggcgaatgcgctgatt
agtcataatattcatagaactgataaaaacttatggacggcgaatggtgacggcgttgag
ccgaaattatggcagttatacaatgagtctgaggaggctttggcgattgcgaatgagatt
caggcgcaaattgcgaacggccgtcaatatggtgacgtggcggtgttgtaccgaacgaat
gcgcaaagttacgcaattgagcgagccctgcgtcagagctatattccgtataaaattgtc
ggcggtctgcgattcttagatcgagcggtcgttaaggatttattggcatatcttcgattg
ttatatcagccgagtgatcgagttagttttttgcgaattgtgaatacgccaaaacgtggc
gttggcgcggtgagtatttctaagtttttggactggaatgacgcgtcagggcgagatata
atcagtggtttgctgatggttgaggaggcggatactttgacggcgcgtgcaaaacgtccg
ttgctagagtttggtcaaaaactgcacgatttgcagcaggaaattgacggatctccagcc
gaactgattgaaaaaattatgaaaagtactggctatgaagattttataaacgacggaacg
ccgcaagctgaggagcgaatggaaaatatcggcgtgcttttgtcagaggcgaaggcttac
gttgacgtggcgacgtttttggaagagatggctttgatgtcttcgacggatacgactgcc
gatcaacaagtaacgctcatgacgcttcatgcggctaaaggtttggagtttccggtggtt
tttctggcgggactggaagaggggattttgccgcacgcgagagtgtttgatagcggcaat
gctgatgacgtcgaagaagaacgccgattgtgctacgttggcgtaactcgggcgagggaa
gaattgttcgttagttgtgctagctctcggacgcaatttggtcagatcggctataatatg
ccatcgaggtttttggacgagatgggcttgatggctggtggtgttgataggccagctcag
ccgattatagaacctgatttttattcggaagatattggcttggaagttggtgatcgagtt
cgcagcccgagttttggttcgggggaaattattgacagcgaagggctgagtgttacggtt
cagtttgacaatggaaatattaagaaattgaacgtcgagttcgcgcgcttggagaaaatt
tga
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