Candidatus Nanosynbacter sp. TM7-008: LRM48_003250
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Entry
LRM48_003250 CDS
T10994
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
nant Candidatus Nanosynbacter sp. TM7-008
Pathway
nant03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nant00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LRM48_003250 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nant03019
]
LRM48_003250 (rny)
Messenger RNA biogenesis [BR:
nant03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LRM48_003250 (rny)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
KH_2
KH-I_KHDC4-BBP
Ribosomal_S18
Motif
Other DBs
NCBI-ProteinID:
XRW97694
LinkDB
All DBs
Position
complement(597421..598911)
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AA seq
496 aa
AA seq
DB search
MIEVIIAAAIGAGAGAAGLVGYQRTRQINGKNQIERDLADAKTKASDIVLKAKDEALKIE
NERRKEWQKTENRLADREKTLDNKLEELDRRAEKLRAHEDEVDNLKNEIRDIRSRQQEKL
EKIAGLKKKDAADKLMQMTERDIKQDLVGLVSKLQHDAMDDAEERAQMILVTAMERMSSE
VTAERTVTAVKLTDDEMKGRIIGKEGRNIQALQRETGVDILVDDTPGMIILSSFDPVRRQ
VARLSLEMLMKDGRIHPARIEEVVAKAKKQIEKEVRQAGEDAMRETGVVGIPKEMLLLLG
ELKFRTSFGQNVLKHSTEMAQIAGMIAEEIGADVRITKIATLLHDVGKAVSHKIEGKHHH
IGAELARKYGMDERIVHAIEAHHDDIEATTPEAIIVRVCDAASAARPGARNVSAENFAER
MRDLENVATSFEGIDKAYAISAGREVRVIVRPQTIDDLSAIKLARDIATKIESTMQYPGT
IKVNVIRETRAIEFAK
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atgatagaagtaattattgccgcggctattggagctggcgcgggtgctgctggtcttgtt
ggatatcagagaactcgccaaattaacggtaaaaatcagattgagcgagatctggcggat
gcaaaaactaaggcgagcgatattgtcctaaaggctaaggatgaggcgcttaagattgaa
aatgaacgtcgcaaggagtggcaaaagactgaaaatcgtttggcggatcgtgagaagact
ttggataataagctggaagagcttgatcgacgagcggaaaaattgcgcgcgcatgaggat
gaagttgataatcttaaaaatgaaattcgcgatatccgctccagacagcaggagaaattg
gagaaaatcgctggattgaagaaaaaagacgctgccgacaagttgatgcaaatgactgag
cgcgacattaagcaagacttggttggtttggtgtcgaaactacaacacgacgcaatggat
gacgccgaagaacgagcgcaaatgatcctcgtgaccgcaatggaacgaatgagtagcgaa
gtgactgctgagcgcacagtgactgcggtcaagttgactgatgacgagatgaagggtcga
attattggtaaggaagggcgtaatattcaggcgctgcagcgcgaaactggtgtcgatatt
ttagttgacgatacaccgggcatgattattttgtcgagttttgatcctgttcgtcgacaa
gtggctcgcttgagtcttgagatgctgatgaaggatggtcgtattcatcctgcgcgtatt
gaagaggtcgttgctaaagccaaaaaacagattgaaaaagaggttcgacaagctggtgaa
gatgctatgcgcgaaactggcgtagttgggattccgaaggaaatgctgttgttgcttggt
gaattgaagtttcgtaccagcttcggtcagaacgttctgaagcattcgactgagatggcg
caaattgctggaatgattgctgaagaaatcggcgcggatgtgcgaattacgaagattgct
acacttcttcatgacgttggtaaggctgtgtcgcataaaattgagggcaaacatcatcac
attggggcggaattggctcgtaaatatggcatggatgagagaattgttcacgcaatcgaa
gcgcaccacgatgatatcgaagcgacaactccagaggcaattattgttcgagtttgtgac
gcggcttcggctgcgcgtccaggtgcgcgtaacgtttctgctgagaattttgcagagcga
atgcgcgatttggaaaacgtcgctacgagctttgagggaattgataaggcttacgcgatt
tctgccggtcgtgaggttcgtgtgatcgttagacctcagacgattgatgatttgtcggcg
attaaattggcgcgagatattgcgacgaaaattgagtcgacaatgcaatatcccggcacg
attaaggttaacgtgattcgcgaaacgcgagcaattgagtttgctaaataa
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