Nitrospirillum viridazoti: Y958_00175
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Entry
Y958_00175 CDS
T04935
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
nao
Nitrospirillum viridazoti
Pathway
nao03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nao00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Y958_00175 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nao03021
]
Y958_00175 (rho)
03019 Messenger RNA biogenesis [BR:
nao03019
]
Y958_00175 (rho)
Transcription machinery [BR:
nao03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Y958_00175 (rho)
Messenger RNA biogenesis [BR:
nao03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Y958_00175 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
OB_RNB
AAA_22
NACHT
S1CSD-TOTE-2
AAA
Fungal_virus_P2_C
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
ASG19413
UniProt:
A0A248JKX6
LinkDB
All DBs
Position
1:complement(34765..36027)
Genome browser
AA seq
420 aa
AA seq
DB search
MNLQELKAKSPAELLAFAEELQIENAGTLRKQDMMFAILKQLAENDVPIFGEGVLEVLQD
GFGFLRSPESNYLPGPDDIYVSPSQVRRFGLRTGDTVEGQIRSPKDGERYFALLKVGSIN
FDHPDKVRHRINFDNLTPLYPEERLKLEIEDPVRNKKDMTTRVIDLVAPLGKGQRALIVA
PPRTGKTVMLQNIAHSIATNHPEVYLIVLLIDERPEEVTDMARSVRGEVISSTFDEPATR
HVQVTEMVLEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALQRPK
RFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKLSDKRVFPAI
DIQKSGTRKEELLVEKGTMAKMWILRRILNPMGATDAVEFLIDKLKQSKQNSEFFESMNQ
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgaatctccaagagttaaaggccaagtcgcccgccgagctgctggcgttcgcggaagag
ctgcagattgagaacgcgggcaccctgcgtaagcaggacatgatgttcgccatcctgaag
cagctggccgaaaacgacgtccctatcttcggcgaaggcgtgctggaggttctgcaggac
ggcttcggtttcctgcgctcgcccgaaagcaactatctgccgggtcccgacgacatctat
gtcagccccagccaggtgcgccgcttcggcctgcgcaccggcgacacggtggaaggccag
atccgctcgcccaaggatggtgagcgctatttcgccctgctgaaggtcggctcgatcaac
ttcgaccacccggacaaggtgcgtcaccgcatcaacttcgacaacctgaccccgctctac
ccggaagagcggctgaagctggaaatcgaggatccggtccgcaacaagaaggacatgacc
acccgggtcatcgacctggtggccccgctgggcaagggccagcgcgccctgatcgtggcg
ccgccccgtaccggcaagacggtgatgttgcagaacatcgcccactccatcgccaccaac
catcccgaggtctacctcatcgtcctgctgatcgatgagcgtccggaagaagtgaccgac
atggcccgctccgtccggggcgaggtcatcagctccaccttcgacgagccggcgacccgc
cacgtccaggtgacggagatggtgctggagaaggccaagcgcctggtggagcacaagcgc
gacgtcgtcatcctgctggacagcatcacccgcctggcccgcgcctacaacacggtggtg
ccgtcctcgggcaaggtgctgaccggcggtgtggacgccaacgccctgcagcgccccaag
cgcttcttcggcgccgcccgcaacatcgaggaaggcggcagcctgaccatcatcgccacc
gcgctgatcgacaccggctcacgcatggacgaggtcatcttcgaagagttcaagggcacc
ggtaactcggaaatcgtcctcgaccgcaagctgtcggacaagcgtgtcttcccggccatc
gacatccagaagtcgggcacccgcaaggaagagctgctggtggaaaagggcaccatggcc
aagatgtggatcctacgccgtatcttgaacccgatgggtgccaccgacgcggtggaattc
ctcatcgacaagctcaagcagagcaagcagaattccgaattcttcgagagcatgaaccag
taa
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