Nitrospirillum viridazoti: Y958_06330
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Entry
Y958_06330 CDS
T04935
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
nao
Nitrospirillum viridazoti
Pathway
nao03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Y958_06330 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nao03400
]
Y958_06330 (mfd)
Enzymes [BR:
nao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Y958_06330 (mfd)
DNA repair and recombination proteins [BR:
nao03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Y958_06330 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
UvrB_inter
ResIII
MFD_D3
Cas3-like_C_2
UB2H
AAA_16
AAA_30
SecA_DEAD
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ASG21860
UniProt:
A0A248JTM4
LinkDB
All DBs
Position
1:1353669..1357160
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AA seq
1163 aa
AA seq
DB search
MAFFAPDVAVLPFPAWDCLPYDRVSPNGDIVARRIETLTTLLGARPKGPFIVLTTLNAAL
QKVPPRLAFRNATFGAKVGGRLNVDELQRFLANNGYTRAQTVREPGEYAVRGGIIDLFPP
ATPEPLRLDLFGDELEGVRAFDPMTQMTTEKRSGVDLKPMSEVFLDDPSVQRFRTGYREL
FGAVTDSDPLYEGISAGRKMPGMEHWLPLFHAGLDTLFDYVPAAVVSLDAQAEEARDARL
SQVADFYEARRTFQEVEKKSGTPVYKPVPTSAMFLDGDAWDRHLALRCVAQLSTFAAVAR
EDEKGGSNPNLTDAGGRRGRDFADARANPDVNVFRALGQHIDQMHADGRRVVVAGYSQGA
RDRLAKMLKEHGIDPALTADTWAEVGAQESRATAVIVLGIDTGFTTGDLAVITEQDILGD
RLARPSQKKRRAANFIAEAASLSPGDLVVHVDHGIGRYDGLETLTVTGAPHDCLRILYDG
GDKLYVPVENIEVLSRFGSEESGAQLDKLGGVGWQSRKARVKKRLKDMADALLRIAAERA
LRKAPPIEVPDGVYDEFAARFPYAETDDQLKAIEDVLEDLNSGQPMDRLVCGDVGFGKTE
VALRAAFVAAMSGLQVAVVVPTTLLARQHTRTFEKRFAGLPVRLGHLSRLVTAKESAQTK
AGLADGTIDIVVGTHALLAKSIQFKRLGLVIVDEEQHFGVKQKERLKELRTDVHVLTLTA
TPIPRTLQLALSGVRELSLIATPPVDRLAVRTFVLPYDPVVIREAILREHYRGGQSFYVC
PRIEDLPKLQERLAELVPEVKMITAHGQMPAAQLEEVMTAFDEGKYDLLLATNIIESGLD
IPSANTLIVHRADMFGLAQLYQVRGRVGRSKVRGYAYLTYQPKTVLSQTAQQRLHVIETL
DSLGAGFQLASHDMDIRGAGNLLGEEQSGQIREVGVELYQQMLEEAVAAARGGLTEAQAA
EEQWTPQIQLGMPVLIPEDYVADLGIRLSLYRRVADLVDRAEIDAFAAEMVDRFGTLPGE
VENLLRLVEIKRLCRDAGVQTLDAGPKGAVIGFRNNEFKNPAALVGFIQQQAGTAKIRPD
HKLVLLRPWDSAETRMDGVRKLMSDLAKMAAGEMVKTDPPPPPPPPPPPKPQGKPVSAWG
HKPPLPASKLNRPGFSAPPRSRR
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
ttggccttcttcgcgcccgacgtggcggtgctgcctttcccggcgtgggactgcctgccc
tatgaccgcgtctcgcccaacggcgacatcgtggcccggcgcatcgagacgctgacgacc
ctgctgggcgcgcggccgaaaggccccttcatcgtcctcaccaccctgaacgccgccctg
cagaaggtgccgccgcgcctggccttccgcaacgccaccttcggcgccaaggtgggcggc
cgcctcaacgtcgatgagctgcagcgcttcctggccaacaacggttacacccgcgcccag
acggtgcgtgagccgggcgagtacgccgtgcgcggcggcatcatcgacctgttccccccg
gcgacgccggaacccttgcgcctggacctgttcggggatgagctggaaggcgtgcgcgcc
ttcgaccccatgacccagatgaccacggagaagcggtcgggcgtggacctcaaacccatg
tcggaggtgttcctggacgacccctccgtccagcgtttccgcaccgggtaccgggagctg
ttcggcgccgtcaccgacagcgacccgctgtatgagggcatcagcgccgggcgcaagatg
ccgggcatggaacattggctgcccctgttccacgccggcctggacacgctgttcgactat
gtccccgccgccgtggtcagcctggacgcccaggcggaggaggcgcgcgacgcccgcctg
tcccaggtggcggacttctacgaggcccgccgcaccttccaggaggtggagaagaagtcg
ggcacgccggtctacaagccggtgccgacctccgccatgttcctggatggtgacgcctgg
gaccggcacctggccctgcgctgcgtggcgcagctgtcgaccttcgccgctgtcgcccgt
gaagacgaaaagggcgggtccaaccccaacctgaccgacgccggcggccgccgggggcgg
gacttcgccgacgcccgcgccaacccggacgtgaacgtcttccgcgcgctgggccagcac
atcgaccagatgcacgccgacggccgccgcgtggtggtggcgggctacagccagggtgcc
cgcgaccgcctggccaagatgctgaaggaacacggcatcgacccggccctgaccgccgac
acctgggcggaggtgggggcgcaggaatcgcgggccaccgccgtcatcgtgctgggcatc
gacaccggcttcaccaccggcgacctggcggtcatcaccgaacaggacatcctgggcgac
cgcctggcccgcccgtcacagaagaagcgccgcgccgccaacttcatcgcggaggccgcc
agtctgtcgcccggcgacctggtggtgcacgtcgatcacggcatcggccggtacgacggt
ctggagacgctgaccgtcaccggggccccgcacgactgcctgcgcatcctctacgacggc
ggcgacaagctgtacgtgccggtcgagaatatcgaggtgctgtcccgcttcgggtccgag
gaatcgggcgcgcagctggacaagctggggggggtcggctggcagtcgcgcaaggcccgc
gtcaagaagcggctgaaggacatggccgacgcgctgctgcgcatcgccgcggagcgcgcc
ctgcgcaaggccccgcccatcgaggtgccggacggcgtctatgacgaattcgccgcccgc
ttcccctatgccgagacggatgaccagctgaaggccatcgaggacgtgctggaggatttg
aattccggccaacccatggaccgcctggtgtgcggcgacgtcgggtttgggaagaccgag
gtggccttgcgcgccgccttcgtcgcggccatgagcggcttgcaggtggcggtggtggtg
cccaccaccctgctggcccgccagcacacccgcaccttcgagaagcgcttcgccggcctg
cccgtgcgcctggggcacttgtcgcgcctggtgacggcgaaggaatccgcccagaccaag
gccggcctggccgatggcaccatcgacatcgtggtcggcacccacgccctgctggccaag
agcatccagttcaagcggctgggcctggtcatcgtggacgaggaacaacatttcggcgtg
aagcagaaggaacggctgaaggaactgcgcaccgacgtgcacgtcctgaccctgaccgcc
acgcccattccccgcaccctgcaattggcgctgagcggcgtgcgggagctgtcgctgatc
gccaccccgccggtggaccgcctggccgtgcgcaccttcgtgctgccctatgacccggtg
gtgatccgcgaggccatcctgcgcgagcattatcgcggcgggcagagcttctacgtctgc
ccgcgcatcgaggatctgcccaagctgcaggaacggctggccgagctggtgccggaggtg
aagatgatcaccgcccacggccagatgccggcggcgcagttggaggaggtgatgaccgcc
ttcgatgagggcaagtacgacctgctgctggccaccaacatcatcgaaagcggtctggac
atccccagcgccaacaccctgatcgtccaccgcgccgacatgttcggcctggcgcagctg
taccaggtgcgcggccgcgtgggccggtccaaggtgcggggctacgcctacctgacctat
cagcccaagacggtgctgtcgcagacggcgcagcagcgcctgcacgtcatcgagacgctg
gacagcctgggggcgggcttccagctggccagccatgacatggacatccgtggtgccggc
aacttgctgggtgaggagcagtccggccagatccgtgaggtgggcgtggaactctaccag
cagatgctggaggaggcggtggccgccgcgcgcggcggcctgacggaggcgcaggcggcg
gaggagcagtggacgccgcagatccagctgggcatgccggtgctgatcccggaagactac
gtcgccgatctcggcatccgcctgtcgctctaccgccgcgtggccgacctggtggaccgg
gcggagatcgacgccttcgccgccgagatggtggaccgctttggcaccctgccgggggag
gtggagaacctgctgcgcctggtggagatcaagcgcctgtgccgcgacgccggggtgcag
accctggacgcgggccccaagggtgccgtcatcggcttccgcaacaacgagttcaagaac
cccgccgccctggtggggttcatccagcaacaggccggcaccgccaagatccggccggac
cacaagctggtgctgctgcgcccctgggacagcgcggagacgcgcatggacggcgtgcgc
aagctgatgagcgacctggccaagatggcggcgggtgagatggtgaagaccgacccgccc
ccgccaccgccgccacccccgccgcccaagccgcagggcaagcccgtctccgcctggggg
cacaagccgccgctgccggccagcaagctgaaccgcccgggcttctccgccccgccgcgc
agccggcggtag
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