Nitrospirillum viridazoti: Y958_16695
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Entry
Y958_16695 CDS
T04935
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
nao
Nitrospirillum viridazoti
Pathway
nao03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nao00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Y958_16695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nao03019
]
Y958_16695
03009 Ribosome biogenesis [BR:
nao03009
]
Y958_16695
Enzymes [BR:
nao01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Y958_16695
Messenger RNA biogenesis [BR:
nao03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Y958_16695
Ribosome biogenesis [BR:
nao03009
]
Prokaryotic type
rRNA processing factors
Y958_16695
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ASG22566
UniProt:
A0A248JVM0
LinkDB
All DBs
Position
2:complement(747556..750696)
Genome browser
AA seq
1046 aa
AA seq
DB search
MAKRMLVDATHPEQTRVVVVNGNKLDELDFEIASRKQLKGNIYLAKVIRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYYRIPVADREALLREQEELEREREAMEHEEEEALHAAEHPPLL
EAGASAVSYEEGEAAPAAAYEAVADEVGAHETVATDLVVPEGHPEEAYVPPAQPLTIEQP
YITEDLPAEHATTGDADGETAEFAEGADFTEGDDDVEDGDEGEDGEAAEGETTEGENARQ
GGDRRRHRGRRGRRGRNDRGGDRAPQENGHHGEAAHADEEGEERRRPRSLRSYKIQEVIR
RRQILLVQVTKEERGTKGAALTTYLSLPGRYCVLMPNTPRGGGISRKITNPQDRKRLKEL
LEELDIPKGMAVILRTAGMERSKQEIKRDLEYLMRLWDNIREQTMQAVAPALIYEEANLI
KRSIRDLYASDIDEVHVEGAAGYRTAKDFMRMLMPSHAKKIQLYTDDIPLFHRFQVDNQI
DAMFNPVVQLRSGGYIVINQTEALVAIDVNSGRATKERNIEETALRTNLEAAEEVARQLR
LRDLAGLIVIDFIDMEDGRNNAAVEKRLKEAMKADRARIQLGRISPFGLMELSRQRLRPS
LQEINFERCPHCEGTGMVRSLESAALAVLRAIEDEGIRRRSTEITVTAASSVTLYILNQK
RDALTAIERRYGFRVFLSADDSLVPPDHRLERIRARTAADDQPAAAVSAERIYAETDRAL
EHVDEVEDEVAEEEIEETTAEAANGEGNGQDRRRRRRRRRGGAQDRYEGAPQAVEAAEGE
QPVEEADLAVAEDADGEGAESAEAADGDDANGERKKRRRGKRGGRRRGRHGVEGAAEGED
HEGGAEGEDAVDAEGVTIPAEGEAVPVPATEPVETTTTEAAPVDTPVAEVLVAEAAPVEA
APAAEPVAEEAPAKPKRATRSRKKAAPVAEEAPAAEAPVAEAAPVEAAPAAEPVAEEAPA
KPKRATRSRKKAAPVDAPADAPVAEQAPAVAEPVAPIAAPEPVAVAVEPAPEATSSETAT
PEVHPSVELNPVVEQPRKGWWNRILK
NT seq
3141 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcgtatgcttgtcgacgccacgcatccggagcagacccgggttgtcgtggtc
aatggtaacaagctggacgagcttgatttcgaaatcgccagccggaagcagctgaagggc
aatatctatcttgccaaggtgatccgggtggagccgtcgctgcaggcggctttcgtggaa
tacggcggcaaccgccacggcttcctcgccttctccgaaatccatcccgactactaccgc
atcccggtcgccgaccgcgaagccctgctgcgggagcaggaggagctggagcgcgagcgc
gaggcgatggagcacgaggaggaggaggccctgcacgcggcggagcacccgcctctgctg
gaagccggcgcctccgccgtgagctatgaggaaggcgaagccgccccggccgccgcttat
gaggcggtggccgacgaggttggcgcgcatgaaaccgtggccaccgacctggtggtgccg
gagggtcatccggaagaggcctacgtgcccccggcccagcccctgaccattgagcagccc
tacatcaccgaggatctgccggcggaacacgccaccaccggcgacgccgatggcgaaact
gccgagttcgccgagggtgcggacttcaccgaaggcgacgacgacgtcgaagacggtgac
gagggtgaagacggcgaggccgccgagggtgagaccaccgagggcgagaatgcccgccag
ggtggcgaccgccgccgtcaccgcggccgccggggccgtcgcggccgtaacgatcgcggc
ggggatcgcgccccgcaggagaacggccaccatggcgaggccgcgcacgccgacgaggag
ggcgaggaacgccgccgtccgcgctcgctgcgctcttacaaaatccaggaagtcatccgc
cgccggcagatcctgctggtgcaggtgacgaaggaagagcgcggcaccaagggtgcggcc
ctgaccacctacctgtccctgcccggccgctactgcgtcctgatgcccaacaccccccgg
ggcggcggcatcagccggaagatcaccaacccgcaggatcgcaagcgcctgaaggagttg
ttggaggagctggacatcccgaagggcatggccgtcatcctgcgcaccgcgggcatggaa
cggtccaagcaggagatcaagcgcgacctcgagtacctgatgcgcctgtgggacaacatc
cgcgagcagaccatgcaagcggtggcgccggcactgatctatgaggaagcgaacctcatc
aagcggtccatccgcgacctgtacgccagcgacatcgacgaggtgcatgtggagggcgcg
gcgggctaccgcaccgccaaggacttcatgcgcatgctgatgcccagccacgccaagaag
atccagctctatacggacgacattccgctgttccaccgtttccaggtggacaaccagatc
gacgccatgttcaacccggtggtgcagctgcgctccggcgggtacatcgtcatcaaccag
acggaagccctggtcgccatcgacgtcaactccggccgcgccaccaaggagcggaacatc
gaagagacggcgctgcgcaccaacctggaggccgccgaggaggtggcccgccagctgcgc
ctgcgcgatctggccggcctgatcgtcatcgacttcatcgacatggaggacggccgcaat
aacgccgccgtcgagaagcgcctgaaggaggccatgaaggccgaccgggcgcgcatccag
ctgggccgtatctcgcccttcggcctgatggagctgtcgcgtcagcgcctgcgcccgtcg
ctgcaggaaatcaacttcgagcgctgcccgcattgtgagggcaccggcatggtgcgctcg
ctggaaagcgccgcgctggccgttctgcgcgccatcgaggatgaaggcatccgccggcgc
tccaccgagatcacggtgacagccgccagctcggtcaccctgtacatcctgaaccagaag
cgcgacgccctgacggccatcgaacgccgctacggcttccgcgtcttcctgtcggccgac
gacagcctggtgccgccggaccaccgtctggaacgcatccgcgcccgcactgcggccgac
gaccagcccgccgccgccgtgagcgccgagcgcatctatgccgagaccgatcgtgcgctg
gagcacgtggacgaggtggaggacgaggtcgccgaagaggagatcgaggagaccacggcc
gaggctgccaacggcgaaggcaatggccaggatcgccgccgtcgccgccgccgccgtcgt
ggcggtgctcaggaccggtatgagggcgcgccgcaggccgtggaagcggccgagggtgag
cagcccgtcgaagaggccgacctggccgttgccgaggatgctgatggcgaaggcgccgaa
tccgcggaagcggccgatggtgatgacgccaatggcgagcgcaagaagcgccggcgcggc
aagcgcggcggtcgccgtcgcggccgccatggcgtcgagggcgcggccgagggtgaggat
catgagggtggtgccgagggcgaggacgctgtcgacgccgagggcgtgaccatcccggcc
gaaggcgaggccgtgcctgtgccggccaccgagccggtggagaccaccaccaccgaggcc
gccccggtggacacgccggtcgccgaggttctggtggccgaggccgcaccggtcgaagcg
gcccccgccgccgagccggtcgcggaagaagcccccgccaagcccaagcgcgccacgcgc
agccgcaagaaggccgcaccggtggcggaggaggcccctgccgccgaagccccggtggcc
gaggccgcaccggtcgaagcggcccctgccgccgagccggtcgcggaggaggctccggcc
aagcccaagcgcgccacccgcagccgcaagaaggcagcccccgtggacgccccggctgat
gctccggtcgccgagcaagcgccggcggtggccgagcccgtcgcccccatcgcggcgccc
gagccggtggcggtggcggtggagcctgcgcccgaggccacgtcttccgagacggccacc
ccggaggtccacccttcggtggagctgaacccggtggtggagcagcccaggaagggctgg
tggaaccgtatcctgaagtaa
DBGET
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