Nautilia sp. PV-1: C3L23_06625
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Entry
C3L23_06625 CDS
T05986
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
nap
Nautilia sp. PV-1
Pathway
nap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C3L23_06625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nap03019
]
C3L23_06625
03016 Transfer RNA biogenesis [BR:
nap03016
]
C3L23_06625
Enzymes [BR:
nap01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
C3L23_06625
Messenger RNA biogenesis [BR:
nap03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C3L23_06625
Transfer RNA biogenesis [BR:
nap03016
]
Prokaryotic type
tRNA degradation factors
C3L23_06625
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNR_2nd
OB_RNR_1st
OB_RNB
CSD2
Motif
Other DBs
NCBI-ProteinID:
AZV46956
LinkDB
All DBs
Position
complement(1218054..1220012)
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AA seq
652 aa
AA seq
DB search
MKEFAYKLVQGIASKDVPRDKRDIVNDLIALRIVSDSKIIKLKSKYRIGKVDVTKKGFGF
LTPIGVKEKDYLIEAEHLNGASRGDLVIAEKLFNKKGRPKAKVVYILEKAFSISVVYLTF
EYKNNKKIPVLKNIKTDLQTFVAEKKKTLKKLPEGAVFKVDNYTNKIIDVLGVLDDPWVD
EKISLALYNKKEEFSKKAIAEAKAFGDYIDKDLYPHRVDLTHLPFCTIDPPTAKDHDDAI
YFDLENNELYVAIADVSEYVFVNSNIDKEAKERGFSIYFPHKSVPMLPRELSENMCSLKE
NEDRLAFVFKIKLNNKNEVVKEELFEAVINSKRKYSYDRIDEFLDGKFENTDEVDTEILK
WLMPLWTRVKQIRTKRLKTGLDFSSDEIKMTLNKDGLIESIELEKETPSHKLIEDCMLLA
NKAAAKMMDFGIFRVHEKPSSNSIDELYESLGALGINVDVDEKDFVKVVRDIQKQAKMMG
IEKEVDKLIIRSQQQARYDAKNIGHYALGFEKYTHFTSPIRRYSDLTLHRLLKAILRNDK
KQMEYILRNIEALVVKISELEREAMKVEWDFYDRKYARYAKGHINEVYKGIIEDTEIPPI
AKITEDLLLGARVFLKDKKKYNLFEKVDIEIVSSNIATAKIKGKVKLKEIEE
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagaatttgcatataaattagtacagggtatcgcttcaaaagatgtacccagggat
aaaagggacatagttaacgatttaattgcccttaggatcgtcagcgattctaaaataatt
aaattaaaatccaaatacagaataggcaaagtagacgtaacaaaaaaaggtttcggattt
ttaactccgattggcgttaaagaaaaagactatttaatagaagcggagcatttaaatggt
gcaagcagaggggatcttgttatagccgaaaagctttttaataaaaaaggcagacctaaa
gccaaagttgtatatattttagaaaaggctttcagtataagcgtcgtttatcttacattt
gaatacaaaaataacaaaaaaatacctgtattaaaaaatataaaaaccgatcttcagact
tttgtagcggaaaagaaaaaaacattaaaaaaactgcccgaaggtgcagtatttaaggtt
gacaattatacgaataaaattattgatgtgttaggtgtgcttgacgatccttgggtagat
gaaaaaatatcgcttgctttatacaataaaaaagaagagttcagcaaaaaagccattgcg
gaggcaaaagcttttggagactatatcgataaagatttatatcctcatagagttgatttg
acccatttacctttttgtactattgatcctcctacagctaaagaccatgatgacgcaata
tattttgatttggaaaacaatgagctttatgtcgcaattgcggatgtcagtgagtatgtt
tttgtaaacagcaatattgataaagaagcaaaagaaagagggtttagtatttattttcct
cataaatccgtgcctatgcttccgagagaactgagtgaaaatatgtgttctttaaaagaa
aatgaagacaggcttgcctttgtatttaaaataaaacttaataataaaaatgaagttgta
aaagaagaacttttcgaagcagtcattaattcgaaaagaaagtattcttatgacagaata
gatgaatttcttgacggtaaatttgaaaataccgatgaagtagacacggaaatactcaag
tggcttatgcctttatggaccagggttaaacagattagaacgaaaagattaaaaacaggt
ttggatttcagcagtgacgaaataaaaatgacgctaaacaaagacggccttatcgaaagt
attgagcttgaaaaggaaacgccttcacataaactgattgaagactgtatgcttttagca
aataaagctgctgctaaaatgatggatttcggaatattcagggtgcatgaaaaaccttca
agcaacagtatcgatgaactttacgaaagtttaggagctttgggtataaatgtagatgta
gatgaaaaagattttgtaaaagtagtaagagatatacaaaagcaggctaaaatgatgggt
attgaaaaagaagtagataaacttataatacgctctcagcagcaggctagatatgatgct
aaaaatataggccactatgctttaggatttgaaaaatatactcattttacatcacctata
agaagatattcggatttgactttacacagactgttaaaagcaatattgaggaatgataaa
aaacagatggagtatattctaagaaatattgaagctcttgttgtaaaaataagcgaactt
gaaagagaagcaatgaaagtcgagtgggatttttatgacagaaaatatgccagatatgca
aaaggacatataaatgaagtttacaaaggaataattgaagatactgaaatacctcctatt
gcaaaaataacggaagatttactgttaggtgcaagggtgtttttaaaagacaagaaaaaa
tataatctgtttgaaaaagtggatattgaaatagtgagttcaaatattgctacagctaaa
ataaaaggtaaagtaaagcttaaggaaattgaagagtaa
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