Nocardioides aquaticus: ENKNEFLB_00993
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Entry
ENKNEFLB_00993 CDS
T07580
Symbol
rtcB
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
naqu
Nocardioides aquaticus
Brite
KEGG Orthology (KO) [BR:
naqu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
naqu03016
]
ENKNEFLB_00993 (rtcB)
Enzymes [BR:
naqu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
ENKNEFLB_00993 (rtcB)
Transfer RNA biogenesis [BR:
naqu03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
ENKNEFLB_00993 (rtcB)
Prokaryotic type
tRNA splicing ligases
ENKNEFLB_00993 (rtcB)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QVT78615
UniProt:
A0ABX8EDU1
LinkDB
All DBs
Position
complement(1017878..1019047)
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AA seq
389 aa
AA seq
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MEKITPTLLSWASELEQGTREQAVTTASMPFVHPHVALMPDAHLGLGATVGSVIPTLGAI
MPAAVGVDIGCGMIAVRTQLTRDELPEDLGTVRQQVERAVPVSAGGANRTVSREHTRARL
EVLAAAAAEAGFDPATYAKRWELQLGTLGSGNHFIEISVDEVDRVWLFLHSGSRGVGNKI
AQHHIGVARRLCEQWWVPLPHRDLAYLVEGTDAFDAYVAQMRWAQHYALLNREEMMDRVV
RQVEEWTGTAVQRTEEVNCHHNYTERERHFGRDVWLSRKGAIDASAGRPGLIPGSMGTAS
YVVTGRGDPVALRSAPHGAGRAYSRSRARRTFSREQLREAMTGIEWRDSEAFLDEIPAAY
KDIDQVMADAADLVEVRHVLRQLVNVKGD
NT seq
1170 nt
NT seq
+upstream
nt +downstream
nt
atggagaagatcacccccaccctgctgagctgggcctccgagctcgagcagggcacccgc
gagcaggcggtgacgacggcctcgatgccgttcgtgcacccccacgtcgcgctgatgccc
gacgcccacctgggcctgggcgcgaccgtcgggtcggtcatcccgaccctcggcgcgatc
atgccggccgcggtcggcgtcgacatcggctgcggcatgatcgcggtccgcacccagctg
acccgcgacgagctgcccgaggacctcggcaccgtgcgccagcaggtcgagcgggctgtc
ccggtctccgccgggggcgccaaccgcacggtcagccgcgagcacacccgggcccgcctg
gaggtcctcgccgccgcggccgccgaggccggcttcgaccccgcgacctacgcgaagcgg
tgggagctgcagctggggaccctcggctcgggcaaccacttcatcgagatctccgtcgac
gaggtcgaccgcgtctggctgttcctgcactccggctcgcgcggggtgggcaacaagatc
gcccagcaccacatcggcgtggcccgccggctgtgcgagcagtggtgggtgccgctgccc
caccgcgacctggcgtacctcgtcgagggcaccgacgcgttcgacgcctacgtcgcccag
atgcggtgggcgcagcactacgcgctgctcaaccgcgaggagatgatggaccgggtcgtg
cggcaggtggaggagtggaccggcaccgcggtgcagcgcaccgaggaggtcaactgccac
cacaactacaccgagcgcgagcggcacttcgggcgcgacgtgtggctctcgcgcaagggc
gccatcgacgcctccgccgggaggcccgggctgatccccgggtcgatgggcaccgcgtcg
tacgtcgtcacgggtcgcggcgaccccgtcgcgctgcgctcggcgccccacggcgcgggt
cgcgcgtactcccgctcgcgggcccggcgcaccttcagccgcgagcagctgcgggaggcg
atgaccgggatcgagtggcgcgacagcgaggcgttcctcgacgagatcccggcggcctac
aaggacatcgaccaggtgatggccgacgccgccgacctggtcgaggtgcgccacgtgctg
cgccagctggtcaacgtcaagggcgactga
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