Nocardioides aquaticus: ENKNEFLB_03122
Help
Entry
ENKNEFLB_03122 CDS
T07580
Symbol
hrdB_1
Name
(GenBank) RNA polymerase principal sigma factor HrdB
KO
K03086
RNA polymerase primary sigma factor
Organism
naqu
Nocardioides aquaticus
Pathway
naqu02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
naqu00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
ENKNEFLB_03122 (hrdB_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
naqu03021
]
ENKNEFLB_03122 (hrdB_1)
Transcription machinery [BR:
naqu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ENKNEFLB_03122 (hrdB_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Motif
Other DBs
NCBI-ProteinID:
QVT80722
UniProt:
A0ABX8EKW5
LinkDB
All DBs
Position
complement(3198452..3199972)
Genome browser
AA seq
506 aa
AA seq
DB search
MSSTARKIPAEVLSHPAVTALIEQASPDGQVTPDDIRRASDEAAVEPRHLKSLMAHLSGL
GISVALPVGARAAAATGTRKSATATAKAPAAAEEASAEKAPAKKAAPARKAAAKKAAPAK
KTAAKAVTKGVAAAPSVTEVVLEPDVAPVIGPDGKKILPDLPDEQFEKDVKVDPTIKEDE
KKASFVVSSADDTDEPEQQVMVAGATADPVKDYLKQIGKVPLLNAEMEVELAKRIEAGLF
SDEKLAKGGRISAKVHEELEWIAEDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQ
EGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARV
QRQMLQDLGREPTPEELAVELDMTPEKVIEVQKYGREPISLHTPLGEDGDSEFGDLIEDS
EAIVPADAVSFTLLQEQLHAVLDTLSEREAGVVSMRFGLTDGQPKTLDEIGKVYGVTRER
IRQIESKTMSKLRHPSRSQVLRDYLD
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
gtgtcctcgaccgcgcgcaagattcctgccgaggtgctctcgcacccggctgtcacggcc
ctcatcgagcaggcctcgccggacggacaggtcacccctgacgacatccgccgcgccagc
gacgaggcagcagtcgagccccgccacctgaagtcgctgatggcccacctcagcggcctc
ggcatcagcgtcgcgctgccggtcggcgcccgcgccgccgccgcgaccggcacccgcaag
agcgccaccgccaccgcgaaggccccggcggccgccgaggaggcctccgccgagaaggcc
ccagcgaagaaggccgcgccggccaggaaggccgccgccaagaaggccgcgccggccaag
aagaccgcggccaaggccgtgaccaagggcgtcgcggcggcgccgtcggtcaccgaggtc
gtcctcgagcccgacgtggcgccggtcatcggccccgacggcaagaagatcctcccggac
ctgcccgacgagcagttcgagaaggacgtcaaggtcgacccgaccatcaaggaggacgag
aagaaggcctccttcgtcgtctcctccgccgacgacaccgacgagcccgagcagcaggtc
atggtcgccggcgcgaccgccgacccggtcaaggactacctcaagcagatcggcaaggtc
ccgctcctcaacgccgagatggaggtcgagctcgccaagcgcatcgaggccggcctgttc
tcggacgagaagctggccaagggcggtcgcatctccgccaaggtccacgaggagctggag
tggatcgccgaggacgggcgccgcgccaagaaccacctcctcgaggccaacctgcggctc
gtggtctccctggccaagcgctacaccggtcgcgggatgctcttcctcgacctgatccag
gagggcaacctcggcctgatccgtgcggtcgagaagttcgactacaccaagggctacaag
ttctcgacctacgccacctggtggatccgccaggcgatcacgcgcgccatggccgaccag
gcccgcaccatccggatcccggtccacatggtcgaggtcatcaacaagctggcccgcgtg
cagcgccagatgctccaggacctgggccgcgagcccacgccggaggagctcgcggtcgag
ctcgacatgacccccgagaaggtcatcgaggtccagaagtacggccgcgagccgatctcc
ctgcacacgcccctcggcgaggacggcgactccgagttcggtgacctcatcgaggactcc
gaggcgatcgtcccggccgacgccgtgtcgttcaccctgctccaggagcagctccacgcg
gtcctcgacacgctctccgagcgtgaggccggtgtggtgtcgatgcgcttcggcctgacc
gacggccagcccaagaccctcgacgagatcggcaaggtctacggcgtgacccgcgagcgg
atccgccagatcgagtccaagacgatgtcgaagctgcgccaccccagccgctcgcaggtc
ctccgggactacctcgactga
DBGET
integrated database retrieval system
