Nocardioides aquaticus: ENKNEFLB_04058
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Entry
ENKNEFLB_04058 CDS
T07580
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
naqu
Nocardioides aquaticus
Pathway
naqu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
naqu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ENKNEFLB_04058 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
naqu03021
]
ENKNEFLB_04058 (rpoC)
03400 DNA repair and recombination proteins [BR:
naqu03400
]
ENKNEFLB_04058 (rpoC)
Enzymes [BR:
naqu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ENKNEFLB_04058 (rpoC)
Transcription machinery [BR:
naqu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ENKNEFLB_04058 (rpoC)
DNA repair and recombination proteins [BR:
naqu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ENKNEFLB_04058 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
QVT81645
LinkDB
All DBs
Position
complement(4142707..4146576)
Genome browser
AA seq
1289 aa
AA seq
DB search
MLDVNFFDQLQIGLATAEDIRGWSHGEVKKPETINYRTLKPERDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITSVDEDARHRDLSELEGKVGLERERLEKRRDGMIEDRARKLEED
LAALEAEGAKADQRRKVKDGAEREMAQLRKRSENEIARLDEVWNTFKSLKIQDLMGDEML
YREMKNWFGKYFEGFMGATAIQKRLQNFDIEAEVESLRDTIANGKGQRKVRALKRLKVVD
AFRKTGNKPEGMVLDAVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDSLFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVSGPQLKLHQCGLPKQMALELFKPFVMKRLVDLSHAQNIKSAKRMVERSR
PVVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLIEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSTNNILKPSDGRPVTMPTQDMIIGLFFLTTDRDGQPGEGR
AFASPAEAIMAFDQGAISLQSVVKIRFDDIVPPLEEGADPDAVRSMTLETTLGRALFNDT
LPADYPFVNYEVGKKALGAIVNDLAERYSKVEVAASLDALKEAGFTWATQSGVTVSIDDV
TQPSDKAEILASFEADAAKVQKQYERGLVTDDERRQELIEIWTEASRKVGEAMENAYDRT
NPIFMMIDSGASGNMNQIRQVGAMRGLVANPKGEIIPRPIKANFREGLSVLEYFISTHGA
RKGMADTALRTADSGYLTRRLVDVSQDVIIREDDCGTERGLPKRIGERLDDGTVVKHENA
ETAAYARSAATEVTHPETGDVLVEAGGDLGDVKIGELIGAGIEQVKVRSVLTCDARTGTC
AKCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVASAEDITQGLPRVVE
LFEARSPKGRSPIAEAAGRVEIEETDKSRKVVITPDDGSEVQEYPVSKRSRLLVEDGGRV
EVGQMIILGTPDPQDMLRILGVRKAQEHLVHEVQQVYRSQGVSIHDKHIEIIVRQMLRRV
TVIESGDTNLLPSDLTDRVIFEEENRRVVSEGGKPASGRPVLMGITKASLATESWLSAAS
FQETTRVLTDAAIHGRSDSLRGLKENVIIGKLIPAGTGLERYRNVRVEPTEEARAAAYSV
TGYDSYDYEFGGNGQAVALDDFDFGSYQN
NT seq
3870 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtgaacttcttcgaccagctccagatcggcctggccaccgcggaggacatc
cgcggctggagccacggtgaggtcaagaagcctgagaccatcaactaccgcacgctcaag
ccggagcgtgacggcctcttctgcgagaagatcttcggtcccacccgggactgggagtgc
tactgcggcaagtacaagcgcgtgcgcttcaagggcatcatctgcgagcgctgcggcgtc
gaggtgacccgctccaaggtgcgtcgcgagcggatgggccacatcgagctcgccgctccc
gtgacccacatctggtacttcaagggcgtcccgagccgcctgggctacctgctcgacctg
gccccgaaggacctcgagaaggtcatctacttcgcggcctacatgatcacctccgtcgac
gaggacgcgcggcaccgcgacctgtccgagctcgagggcaaggtcggcctcgagcgcgag
cggctcgagaagcgtcgcgacggcatgatcgaggaccgcgcccgcaagctcgaggaggac
ctcgcggccctggaggccgagggtgccaaggccgaccagcgccgcaaggtcaaggacggc
gccgagcgcgagatggcgcagctgcgcaagcgctcggagaacgagatcgcgcgcctcgac
gaggtctggaacaccttcaagtcgctgaagatccaggacctcatgggcgacgagatgctc
taccgcgagatgaagaactggttcggcaagtacttcgagggcttcatgggcgccacggcg
atccagaagcgcctgcagaacttcgacatcgaggccgaggtggagtcgctgcgcgacacc
atcgccaacggcaagggccagcgcaaggtgcgcgcgctcaagcggctcaaggtcgtcgac
gcgttccgcaagaccggcaacaagcccgagggcatggtcctcgacgcggtgccggtcatc
ccgccggacctgcgtccgatggtgcagctggacggtggccgcttcgcgacctccgacctc
aacgacctgtaccgccgcgtgatcaaccgcaacaaccggctcaagcgcctgctcgacctc
ggcgcgcccgagatcatcgtcaacaacgagaagcggatgctccaggaggccgtcgactcg
ctgttcgacaacggtcgccgcggtcgtcccgtcaccggcccgggcaaccggccgctgaag
tcgctgtccgacatgctcaagggcaagcaggggcgcttccgccagaacctgctcggcaag
cgcgtcgactactccggtcgttcggtcatcgtctcgggcccgcagctcaagctccaccag
tgcggcctgcccaagcagatggccctcgagctcttcaagcccttcgtgatgaagcgcctc
gtggacctctcgcacgcgcagaacatcaagtccgccaagcggatggtcgagcgctcgcgc
ccggtcgtctgggacgtgctcgaggaggtcatcaccgagcacccggtcctgctgaaccgg
gcgcccacgctgcaccgcctcggcatccaggccttcgagccgcagctgatcgagggcaag
gccatccagatccaccccctggtctgcaccgcgttcaacgccgacttcgacggtgaccag
atggcggtgcacctgccgctgtcggccgaggcccaggccgaggcccggatcctgatgctg
tcgaccaacaacatcctcaagccctcggacggccgtccggtgaccatgcccacccaggac
atgatcatcggcctgttcttcctcaccaccgaccgtgacggtcagccgggcgagggccgg
gcgttcgcgagcccggccgaggcgatcatggccttcgaccagggcgcgatcagcctgcag
agcgtcgtgaagatccgcttcgacgacatcgtcccgccgctggaggagggcgccgacccc
gacgccgtccgctcgatgacgctcgagacgacgctgggccgcgcgctgttcaacgacacg
ctcccggccgactaccccttcgtgaactacgaggtgggcaagaaggccctcggcgcgatc
gtcaacgacctcgccgagcgctactccaaggtcgaggtcgccgcctcgctcgacgcgctg
aaggaggccggcttcacctgggcgacccagtccggggtcaccgtctccatcgacgacgtc
acccagccctccgacaaggccgagatcctggcctcgttcgaggccgacgccgccaaggtg
cagaagcagtacgagcgcggcctggtcaccgacgacgagcgtcgtcaggagctcatcgag
atctggaccgaggcctcgcgcaaggtcggtgaggcgatggagaacgcctacgaccgcacc
aacccgatcttcatgatgatcgactcgggtgcgtcgggaaacatgaaccagatccgtcag
gtcggcgccatgcgcggcctggtggccaaccccaagggcgagatcatcccgcggccgatc
aaggcgaacttccgcgagggtctctccgtgctggagtacttcatctccacccacggtgct
cgcaagggcatggccgacacggcgctgcgcacggccgactcgggctacctgacgcgtcga
ctcgtcgacgtctcccaggacgtgatcatccgcgaggacgactgcggcaccgagcgcggt
ctgcccaagcggatcggtgagcgtctcgacgacggcaccgtggtcaagcacgagaacgcc
gagaccgcggcgtacgcccggtccgcggcgaccgaggtcacccaccccgagaccggcgac
gtgctggtcgaggccggcggcgacctgggcgacgtgaagatcggtgagctcatcggcgcc
ggcatcgagcaggtcaaggtccgctccgtgctgacctgcgacgcccgtaccggcacctgc
gccaagtgctacggccgctcgctggccaccggcaagctcgtcgacatcggcgaggcggtc
ggcatcatcgcggcccagtcgatcggtgagccgggcacgcagctgaccatgcgtaccttc
cacaccggtggtgtggcctcggccgaggacatcacgcagggcctgccccgcgtggtggag
ctcttcgaggcccgctcgcccaagggtcgctcgccgatcgccgaggccgccggccgcgtc
gagatcgaggagaccgacaagtcgcgcaaggtggtcatcacccccgacgacggctcggag
gtgcaggagtaccccgtgtcgaagcgctcgcgcctgctcgtcgaggacggcggccgcgtc
gaggtcggtcagatgatcatcctcggtacgcccgacccgcaggacatgctgcggatcctg
ggtgtgcgcaaggcgcaggagcacctggtgcacgaggtgcagcaggtgtaccgctcgcag
ggcgtgtcgatccacgacaagcacatcgagatcatcgtgcgccagatgctgcgtcgcgtc
acggtcatcgagtccggggacaccaacctgctgccctccgacctcaccgaccgcgtcatc
ttcgaggaggagaaccggcgcgtcgtctccgagggcggcaagccggcctcgggtcgtccg
gtgctgatgggcatcaccaaggcctcgctggccaccgagtcgtggctctcggccgcctcc
ttccaggagacgacccgcgtcctgaccgacgcggcgatccacggccgctcggactcgctg
cgcggtctgaaggagaacgtcatcatcggcaagctgatccccgccggtaccggtctcgag
cgctaccgcaacgtgcgcgtcgagcccaccgaggaggcccgcgccgcggcctactcggtc
accggctacgacagctacgactacgagttcgggggcaacggccaggccgtcgccctggac
gacttcgacttcgggtcgtaccagaactag
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integrated database retrieval system
