Nocardioides aquaticus: ENKNEFLB_04383
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Entry
ENKNEFLB_04383 CDS
T07580
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
naqu
Nocardioides aquaticus
Pathway
naqu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
naqu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ENKNEFLB_04383 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
naqu03019
]
ENKNEFLB_04383 (deaD)
03009 Ribosome biogenesis [BR:
naqu03009
]
ENKNEFLB_04383 (deaD)
Enzymes [BR:
naqu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ENKNEFLB_04383 (deaD)
Messenger RNA biogenesis [BR:
naqu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ENKNEFLB_04383 (deaD)
Ribosome biogenesis [BR:
naqu03009
]
Prokaryotic type
rRNA helicases
ENKNEFLB_04383 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
adh_short
HEM4
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QVT81964
LinkDB
All DBs
Position
complement(4478237..4479985)
Genome browser
AA seq
582 aa
AA seq
DB search
MSEQSADVAETQTTTFADLGLGEATLAAVADVGYEIPSTIQARTIPPLLEGRDLVGLAQT
GTGKTAAFALPILDRLDVKQKTPQALVLAPTRELAIQVCEAFEKYASRLKGVRVLPVYGG
QAYGVQLSALRRGVHVVVGTPGRIMDHLQKGTLDLSELRFLVLDEADEMLNMGFAEDVET
ILADTPDSKQVALFSATMPRQIRSLSSKYLTDPVEITVKNKTTTSANTTQRYLICSYPQK
VDALTRILEVENFEGMIVFVRTKNETESLAEKLRARGFSAMAINGDVAQVQRERTVNQLK
SGKLDILVATDVAARGLDVERISHVVNYDIPTDTESYVHRIGRTGRAGRSGVAISFVTPR
ERYLLKHIEKATRQPLTQMSLPSVEDVNTTRLNRFDEQITEALGSSDLPFFRDVVAHYVR
NHDVPEADVAAALAIAAQGGTPLLLDPDAARPARTEREPRTDRNDRPARSNDRGPRRSDG
AALAQYRISVGKRHKVEPRQIVGAIANEGGLQRSDFGAISIRPEFSLLELPADLPQSTLD
ALASTRISGKLIELQRDKGPAMNRGGGAPARGGKPPYRGNRD
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
gtgagtgagcagagcgcggacgtcgcggagacccagaccacgaccttcgccgacctcggt
ctcggcgaggcaaccctcgccgcggtcgcagacgtcggatacgagatcccgtcgaccatc
caggcgcgcaccatcccgccgctgctcgaggggcgcgacctggtcggcctcgcgcagacc
gggacgggcaagacggccgcgttcgcgctgccgatcctggaccgcctcgacgtcaagcag
aagaccccccaggcgctggtcctggccccgacccgggagctcgcgatccaggtctgcgag
gccttcgagaagtacgcctcgcgcctcaagggcgtccgggtcctgccggtctacggcggc
caggcctacggggtccagctgtccgcgctgcgccgcggcgtgcacgtggtcgtcggcacc
cccggccggatcatggaccacctccagaagggcacgctcgacctgtcggagctgcggttc
ctggtgctcgacgaggccgacgagatgctcaacatgggcttcgccgaggacgtcgagacg
atcctggccgacacccccgacagcaagcaggtcgcgctgttctccgcgacgatgccgcgc
cagatccgctcgctgtcgagcaagtacctcaccgaccccgtcgagatcacggtcaagaac
aagacgaccacctcggcgaacaccacgcagcgctacctgatctgcagctacccgcagaag
gtcgacgcgctgacccggatcctcgaggtcgagaacttcgagggcatgatcgtgttcgtc
cgcaccaagaacgagaccgagtcgctggccgagaagctgcgggcccgcgggttctccgcg
atggccatcaacggcgacgtcgcccaggtccagcgcgagcgcacggtcaaccagctgaag
tcgggcaagctcgacatcctggtcgccaccgacgtcgccgcccgcggcctcgacgtcgag
cggatcagccacgtcgtcaactacgacatccccaccgacaccgagtcgtacgtccaccgc
atcggccgcaccggccgggccgggcgcagcggcgtggcgatctccttcgtcaccccgcgc
gagcgctacctgctcaagcacatcgagaaggccacccgccagccgctcacgcagatgagc
ctgccgtcggtcgaggacgtcaacaccacgcggctcaaccggttcgacgagcagatcacc
gaggcgctcggctcctcggacctgccgttcttccgcgacgtggtcgcccactacgtccgc
aaccacgacgtgcccgaggccgacgtcgcggccgcgctggccatcgccgcccagggcggt
acgccgctgctgctcgaccccgacgcggcccgccccgcccgcaccgagcgcgagccccgg
accgaccgcaacgaccgcccggcccgcagcaacgaccggggcccgcgccgcagcgacggc
gccgccctggcgcagtaccggatctcggtcggcaagcggcacaaggtcgagccgcgccag
atcgtgggcgcgatcgccaacgagggcggcctgcagcgcagcgacttcggcgcgatctcg
atccgtccggagttctcgctgctcgagctgccggccgacctgccgcagtccacgctcgac
gccctggcctcgacccggatcagcggcaagctgatcgagctccagcgcgacaagggcccg
gcgatgaaccgcggcggcggcgcacccgcgcggggcggcaagccgccgtaccgcgggaac
cgcgactga
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