Novosphingobium aromaticivorans: Saro_0023
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Entry
Saro_0023 CDS
T00322
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
nar
Novosphingobium aromaticivorans
Pathway
nar03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nar00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Saro_0023
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nar03021
]
Saro_0023
03400 DNA repair and recombination proteins [BR:
nar03400
]
Saro_0023
Enzymes [BR:
nar01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Saro_0023
Transcription machinery [BR:
nar03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Saro_0023
DNA repair and recombination proteins [BR:
nar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Saro_0023
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Apocytochr_F_C
RPOC_hybrid
Peptidase_M23
YqfD
Motif
Other DBs
NCBI-ProteinID:
ABD24472
UniProt:
Q2GCD8
LinkDB
All DBs
Position
complement(19422..23705)
Genome browser
AA seq
1427 aa
AA seq
DB search
MNDLTKFTNQIAKPETFDQIQIGLASPERIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRMKYKGVVCEKCGVEVTVTKVRRERMGHIELAAPVAHIWFLKSL
PSRIGLLLDMQLKQLERILYFESYVVIEPGLTPLEKYQLLTEDELLDAQDEYGEDAFSAG
IGAEAVKHMLMNLDLVQEKEDLLQELATTKSELKPKKIIKRLKVVESFIDSGNRPEWMIL
DVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKRML
QEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGP
ELKLHQCGLPKKMALELFKPFIYARLDAKGLSMTLKQAKKWVEKERKEVWDILDEVIREH
PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDMVLGIYYLSMDRAGEPGEGMMLADMAEVHQALEA
KAVTLHSKIVARVPQTDEDGNQYLKRFETTPGRMLIGECLPKSHKVPFEIVNRLLTKKEI
GDVIDQVYRHTGQKDTVLFADAIMALGFRHAFKAGISFGKDDMIIPDSKDALVAETKELV
ADYEQQYQDGLITQQEKYNKVIDAWSRCGDQVANAMMEELKSSPIDPETGRQKPINAIYM
MSHSGARGSPAQMKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVSQDCVVIEEDCGTERALEMRAIVQGGSTIASLGERILGRTL
AEDLIEAKSGEVIAQKGELLDEAAIAKIEAAGVQSARIRSPLVCEATQGVCGKCYGRDLA
RGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQVNEQSHLEAISDGTVQYRDIPT
ITDKRGRRLSLARNGEIVVIDTEGRERAIHRVPYGTHLLHENGAIISQGDRLAEWDPFTT
PVITEKPGIVRYQDLVDGKTLTEQTDEATGMSSRVVTENRAAGRGKKEDLRPRLTLLDEN
SGEAARYMMAPGTTLSVEDGQQVEAGDILARASREAAKTRDITGGLPRVAELFEARKPKD
NSIIAKIAGRIEFVRDYKAKRKIAIIPEEGEPVEYLVPKSRVIDVQEGDYVKKGDNLISG
SPDPHDILEVMGVEALAEYLVAEIQEVYRLQGVKINDKHIEVIVRQMLQKVEITNGGDTT
LLPGEQVDLEEMLETNGKLEEGQQPAEGKPVLLGITKASLQTRSFISAASFQETTRVLTQ
AAVEGKKDSLIGLKENVIVGRLIPAGTGAGMNRMRVAASSRDAALRASYRKLQESLIAPA
TAAEEHAAELAQGPEAAIGDDPLATVEGETHGTDADAGDYLIEGDEA
NT seq
4284 nt
NT seq
+upstream
nt +downstream
nt
atgaacgacctgaccaaattcaccaaccagatcgccaagcccgagaccttcgaccagatc
cagatcggtctggcgagccccgagcgcatccgcagctggtccttcggcgagatcaagaag
ccggaaacgatcaactaccgcacgttcaagcccgagcgcgacggcctgttctgcgcgcgc
atcttcggtcccgtgaaggactacgagtgcctgtgcggcaagtacaagcgcatgaagtac
aagggcgtcgtctgcgaaaagtgcggcgtcgaagtcaccgtcaccaaggtgcgccgcgag
cgcatgggccacatcgagctggccgcgccggtcgcccacatctggttcctcaagtcgctg
ccttcgcgcatcggcctgctgctcgacatgcagctcaagcagcttgagcgcattctctac
ttcgaaagctacgtggtcatcgagccgggcctgaccccgctcgaaaagtaccagctcctg
accgaggacgaactgctcgacgcgcaggacgagtacggcgaggacgccttctcggccggc
atcggtgccgaggccgtcaagcacatgctgatgaacctcgacctcgtgcaggaaaaggaa
gacctgctccaggagctggcgacgaccaagtcggagctaaagcccaagaagatcatcaag
cgcctcaaggtcgtggaatcgttcatcgattcgggcaaccgcccggaatggatgatcctc
gacgtcgtgccggtcattccgccagaactgcgcccgctggtgccgctcgacggtggccgc
ttcgcgacctccgacctgaacgacctctatcgccgcgtcatcaaccgcaacaaccgcctc
aagcgcctgatcgagctgcgcgcgccggacatcatcgtccgcaacgaaaaacgcatgctg
caggaggcggttgacgcgctgttcgacaacggccgtcgcggccgcgtgatcaccggcgcc
aacaagcgtccgctcaagtcgctgtccgacatgctcaagggcaagcagggccgcttccgc
cagaacctgctcggcaagcgcgtcgactattcgggccgttcggtcatcgtgaccggtccc
gaactcaagctgcaccagtgcggcctgcccaagaagatggcgctcgagctgttcaagccg
ttcatctacgcccgcctcgatgccaaggggctgtcgatgaccctcaagcaggccaagaag
tgggtcgagaaggagcgcaaggaagtctgggacatccttgacgaggtgatccgcgagcac
ccggtcatgctgaaccgtgcgcccacgctgcaccgtctcggcatccaggccttcgaaccg
gtcctgatcgaaggcaaggcgatccagctgcacccgctcgtctgctcggccttcaacgcc
gacttcgacggtgaccagatggccgtccacgtgccgctttcgctggaagcccagctcgaa
gcgcgcgtgctgatgatgtcgaccaacaacatcctctcgcccgccaacggcaagccgatc
atcgtgccttcgcaggacatggttctcggcatctattacctgtcgatggaccgcgctggc
gagccgggcgaaggcatgatgctggccgacatggccgaagtgcaccaggcgctggaggcc
aaggccgtcacgctgcactcgaagatcgtggcccgcgtgccccagaccgacgaggacggc
aaccagtacctcaagcggttcgagaccacgccgggccgcatgctcatcggcgaatgcctg
cccaagagccacaaggtgccgttcgagatcgtcaaccgccttctcaccaagaaggaaatc
ggcgacgtcatcgaccaggtctatcgccacaccggccagaaggacaccgtgctgttcgcc
gacgccatcatggcgctgggcttccgccacgctttcaaggccggcatctcgttcggcaag
gatgacatgatcatcccggacagcaaggacgcgctggttgccgagaccaaggaactcgtt
gccgactacgagcagcagtaccaggacggtctcatcacccagcaggaaaagtacaacaag
gtgatcgacgcctggagccgctgcggcgaccaggtggcgaacgccatgatggaagagctt
aagtcctcgcccatcgatccggagaccggtcgccagaagccgatcaacgcgatctacatg
atgtcgcactcgggcgctcgtggctccccggcgcagatgaagcagctcgcgggcatgcgt
ggcctcatggccaagccttcgggcgagatcatcgagaccccgatcatctcgaacttcaag
gaaggcctgaccgtccttgaatacttcaactcgacccacggcgcccgaaagggcctcgcg
gacaccgcgctcaagaccgcgaactcgggttacctgacccgccgtctggtcgacgtgtcg
caggactgcgtcgtgatcgaggaagactgcggcaccgaacgtgcgctggaaatgcgcgcg
atcgtgcagggcggctcgaccatcgcttcgcttggcgaacgcatccttggccgtaccctt
gccgaagacctgatcgaggcgaagtcgggcgaagtgatcgcgcagaagggcgaactgctc
gacgaagccgcgatcgcgaagatcgaggctgccggcgtgcagtcggcgcgcatccgctcg
ccgctggtttgcgaagcgacccagggcgtctgcggcaagtgctatggccgcgacctcgct
cgcggtacgccggttaacatcggtgaagctgtcggcgtcatcgccgcgcagtcgatcggt
gaaccgggcacccagctgaccatgcgtaccttccacatcggtggcgcggcgcaggtcaac
gagcagtcgcacctcgaggctatcagcgacggtaccgtgcagtaccgcgacatcccgacg
atcaccgacaagcgcggccgtcgtctgtcgctcgcccgcaacggcgagatcgtcgtgatc
gataccgagggtcgtgagcgcgcgatccaccgcgtgccctacggtacgcacctgctgcac
gagaacggtgcgatcatctcgcagggcgaccgcctggccgagtgggacccgttcaccacg
ccggtgatcaccgaaaagcccggtatcgtccgctaccaggatcttgtcgacggcaagacc
ctgaccgagcagaccgacgaagccaccggcatgtcgagccgcgtggtgaccgagaaccgc
gctgcgggtcgtggcaagaaggaagacctccgtccgcgcctgaccctgctcgacgagaac
tcgggcgaggccgcacgctacatgatggcgccgggcacgacgctgtcggtcgaggacggc
cagcaggtggaagcgggcgacatccttgcccgtgcctcgcgcgaagccgccaagacccgc
gacatcaccggcggtctgccgcgcgttgcagagctgttcgaggcccgcaagccgaaggac
aactcgatcatcgccaagattgcgggccgcatcgagttcgtgcgtgactacaaggccaag
cgcaagatcgcgatcatcccggaagagggtgaaccggtcgagtacctggtgccgaagagc
cgcgtgatcgacgtgcaggaaggcgactacgtcaagaagggcgacaacctgatctcgggc
tcgcccgatccgcacgacatcctggaagtcatgggcgtcgaggctctggccgagtacctc
gtcgcggaaatccaggaagtctaccgcttgcagggcgtgaagatcaacgacaagcacatc
gaggtgatcgttcgccagatgctgcagaaggtcgagatcaccaacggtggcgacaccacc
ctgctgccgggcgaacaggtcgacctcgaggagatgctcgaaaccaacggcaagctcgag
gaaggccagcagcctgccgaaggcaagccagtgctgctcggcatcaccaaggcctcgttg
cagacgcgttcgttcatctcggcggcgtcgttccaggagaccacccgcgtgctcacgcag
gcggccgtggaaggcaagaaggactcgctgatcggcctcaaggagaacgtgatcgtcggc
cgtctcatccccgccggtaccggcgcgggcatgaaccgcatgcgcgtcgcagcctccagc
cgcgatgctgccctgcgcgcctcctaccgcaagctccaggaatcgctgatcgctccggcg
acggcggctgaagagcacgcggcggaactcgcccagggtcccgaagcagcgatcggcgac
gatccgctggcgacggtcgagggcgagacccacggcaccgatgccgacgcgggcgactac
ctgatcgagggtgacgaagcctga
DBGET
integrated database retrieval system
