Novosphingobium aromaticivorans: Saro_0237
Help
Entry
Saro_0237 CDS
T00322
Name
(GenBank) DEAD/DEAH box helicase-like protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
nar
Novosphingobium aromaticivorans
Pathway
nar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Saro_0237
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nar03019
]
Saro_0237
Enzymes [BR:
nar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Saro_0237
Messenger RNA biogenesis [BR:
nar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Saro_0237
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
ABD24685
UniProt:
Q2GBT8
LinkDB
All DBs
Position
complement(244870..246366)
Genome browser
AA seq
498 aa
AA seq
DB search
MSYFSDLGLAEPILRALETKGYNDPTPIQRQAIPALLEGRDLLGIAQTGTGKTAAFALPS
LHRLAANPQPRKPASCRMLVLSPTRELAAQIADNMKGYARNLNLIVDCVFGGVPIGKQAR
RLVPGVDILVATPGRLLDLIDNRALTLGRTEIFVLDEADQMMDLGFIHALKRVANLLPKT
RQSLFFSATMPKAIEDLGKQFIVNPVRVEVAPNSTTAERVEQYVTFINQAEKQALLTLRI
RDLLKTKELDRALVFTRTKHGADRVVRHLSSAGIDARAIHGNKSQAQRTAALEAFRQGSC
PVLVATDIAARGIDVSGVSHVFNFELPNVPEQYVHRIGRTARAGADGIAISFCAPDEKPY
LKDIERLTRVKVDALPLPENFTAEAAKLPAPSRKPAEQEQDARRDARDARGNGGRGGQGR
GQAHGGRAQGRDGRPRDASPRQDRREGDRGPVRNPLHTDRTDRPERIEGERDGNKPRRFR
PRGAPGVGAHRNKVRRAS
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtatttttccgacctcggccttgccgaacccatcctgcgcgccctcgaaacgaag
ggctacaacgacccgacgccgatccagcgccaggccattcccgccctgctcgaaggccgc
gaccttcttggcatcgcgcagaccggcaccggcaagaccgccgcgttcgcgctgccgtcg
ctccatcgccttgccgcgaacccgcagccacgcaagccggcctcgtgccgcatgctcgtc
ctctcgcccacgcgtgagctggccgcccagatcgcggacaacatgaagggctatgcccgg
aacctgaacctgatcgtcgattgcgtgttcggcggcgtgcccatcggcaagcaggcccgt
cgcctggtgcccggcgtcgacattctcgtcgccacccccggccgcctgcttgacctgatc
gacaaccgggcgctgacgcttggccgcaccgagatcttcgtgctcgacgaagccgaccag
atgatggacctcggcttcatccatgcgctcaagcgcgtggcgaacctgctgcccaagacc
cgccagagcctgttcttctcggcgaccatgcccaaggccatcgaggacctcggcaagcag
ttcatcgtcaatcccgtgcgcgtcgaggtcgccccgaactcgaccaccgcagaacgcgtc
gaacagtacgtcaccttcatcaaccaggccgagaagcaggcgctgctgaccctgcgcatc
cgcgatctgctcaagaccaaggaactcgaccgcgcgctggtgttcacccgcaccaagcac
ggcgcggaccgcgtcgtgcgccacctctcgtcggccggcatcgatgcccgcgcgatccac
ggcaacaagagccaggcgcagcgtaccgccgcgctcgaggccttccgccagggatcgtgc
ccggtcctcgtcgcgaccgacatcgcggcgcgcggcatcgacgtctcgggcgtgagccac
gtgttcaacttcgaactgcccaacgtgcccgaacagtacgtccaccgcatcggtcgcacc
gcgcgcgccggcgccgatggcatcgccatcagcttctgtgcgccggatgagaagccctat
ctcaaggacatcgagcgcctgaccagggtcaaggtcgacgccctccccctgcccgagaac
ttcaccgccgaagcggccaagctccccgcgccgagccgcaagccggccgagcaggagcag
gacgcccgccgcgatgcgcgtgacgcgcgcggcaacggcggtcgcggcggacagggtcgc
ggccaggcccacggtggccgtgcccagggtcgcgacggccgcccgcgcgacgccagcccg
cgccaggaccgccgcgaaggcgatcgcggtccggtgcgcaacccgctccacaccgaccgc
accgaccgccccgagcgtatcgagggcgagcgtgacggcaacaagccgcgccgcttccgt
ccgcgcggcgcccccggcgtcggcgcgcaccgcaacaaggtccgccgcgcaagctga
DBGET
integrated database retrieval system
