Novosphingobium aromaticivorans: Saro_1192
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Entry
Saro_1192 CDS
T00322
Name
(GenBank) Excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
nar
Novosphingobium aromaticivorans
Pathway
nar03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Saro_1192
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nar03400
]
Saro_1192
DNA repair and recombination proteins [BR:
nar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Saro_1192
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Saro_1192
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
AAA_16
nSTAND1
DnaJ_CXXCXGXG
AAA_29
AAA_25
AAA_21
BCA_ABC_TP_C
Motif
Other DBs
NCBI-ProteinID:
ABD25637
UniProt:
Q2G936
LinkDB
All DBs
Position
1235856..1238768
Genome browser
AA seq
970 aa
AA seq
DB search
MSLTTISVRGAREHNLKGIDVDLPRDSLIVITGLSGSGKSSLAFDTIYAEGQRRYVESLS
AYARQFLEMMQKPDVEHIDGLSPAISIEQKTTSRNPRSTVATVTEVYDYMRLLWARVGIP
YSPATGEPISAQTVSQMVDRVMALPEGTRAYLLAPVVRGRKGEYRRELAEWQKAGYTRVR
INGEMMPIEDAPALDKKLKHDIEVVVDRIAVRDGIQTRLADSFEQALKLADGLAYIDLAD
GVVPGREDEAEADAKGKKGSMKKTGLPANRIVFSEKFACPVSGFTIESIEPRLFSFNAPQ
GACPACDGLGEKLLFDPQLVVPNENLSLKQGAVVPWAKSNPPSPYYMQVLASLAGHFGFS
LDTPWDALPAEVKIVILYGTAGKAVPLTFIDGKKSYTVQKAFEGVIGNLNRRMLQTESAW
MREELGKFQTAQPCETCEGKRLKPEALSVKVAGADISSITRLSVAAAVEWYGALDSKLTP
QQSQIARAILKEINERLGFLNNVGLDYLNLDRTSGTLSGGESQRIRLASQIGSGLSGVLY
VLDEPSIGLHQRDNDRLLETLKRLRDLGNTVIVVEHDEDAIRTADHVVDLGPGAGVHGGE
IVAQGTLDDILSNPNSLTGQYLTGARRIEVPAHRRPGNGLYIGVEGARANNLQNVSAKIP
LGTFTCVTGVSGSGKSSFTIDTLHAVAARTLNGARVIAGAHDRVTGLEHCDKVIEIDQSP
IGRTPRSNPATYTGAFTLIRDWFAGLPESAARGYKAGRFSFNVKGGRCEKCQGDGLIKIE
MHFLPDVYVTCEECDGKRYNRETLEVKFKGHSIADVLDMTIEDAEEFFKAVPPIRDRMHM
LNEVGLGYVKVGQQATTLSGGEAQRVKLAKELARRSTGQTLYILDEPTTGLHFEDVRKLL
EVLHRLVEQGNSVVVIEHNLDVIKTADWIIDLGPEGGVRGGEIVAEGTPEQVAKNPRSFT
GQYMAPLLKR
NT seq
2913 nt
NT seq
+upstream
nt +downstream
nt
atgtctctcactaccatttccgtccgcggcgctcgtgaacacaatctcaaggggatcgac
gtcgatctcccgcgcgacagcctgatcgtcatcaccggcctttccggctccggcaagtcg
agcctggcgttcgacacgatctacgccgaagggcagcgccgctacgtggaatcgctctcg
gcctacgcgcgccagttcctcgagatgatgcagaagccggatgtcgagcatatcgacggc
ctctcgcccgccatctcgatcgagcagaagaccaccagccgcaacccgcgctccaccgtc
gccacggtgaccgaggtctacgactacatgcgcctgctctgggcgcgcgtcggcattccc
tattcccccgccaccggcgaaccgatcagcgcgcagaccgtcagccagatggtcgaccgc
gtcatggccctgcccgaaggcacccgcgcctacctgctcgctcccgtcgtgcgcggccgc
aagggcgaataccgccgcgaactcgccgaatggcagaaggccggctacacccgcgtccgc
atcaacggcgaaatgatgcccatcgaggacgcccccgcgctcgacaagaagctcaagcac
gacatcgaggttgtggtcgatcgcatcgccgtccgcgacggcatccagacgcgcctcgcc
gacagcttcgaacaggccctcaagctcgccgacggccttgcctacatcgatctggcggat
ggcgtcgtgcctggccgtgaggacgaggcggaggccgatgccaagggcaagaagggctcg
atgaagaagaccggcctcccggccaaccgcatcgtcttctccgaaaagttcgcctgcccc
gtcagcggcttcaccatcgagagcatcgagccgcgcctgttctcgttcaacgccccccag
ggcgcctgccccgcgtgcgacggtctgggcgaaaagctgctgttcgatccccagctcgtc
gtccccaacgagaacctcagcctcaagcagggcgccgtcgtcccctgggcgaaaagcaac
ccgccgtcgccctactacatgcaggtcctcgccagcctcgccggccacttcggcttcagc
ctcgacaccccgtgggacgcgctcccggcggaagtgaagatcgtcatcctctatggcacc
gccggcaaggccgtcccgctcaccttcatcgacggcaagaagtcctacaccgtccagaag
gccttcgaaggcgtgatcggcaacctcaaccgccgcatgctgcaaaccgaatccgcctgg
atgcgcgaggaactcggcaagttccagaccgcccagccgtgcgagacctgcgaaggcaag
cgcctcaagcccgaggccctgtcggtcaaggtcgccggggcagacatctcctcgatcacc
cgcctctccgtcgccgccgcggtcgaatggtacggcgcgctcgacagcaagctcaccccg
cagcaaagccagatcgcccgcgccatcctcaaggaaatcaacgagcgtctcggcttcctc
aacaacgtcggcctcgattacctcaacctcgatcgcacctcgggcacgctctcgggcggc
gagagccagcgcatccgcctcgccagccagatcggctccggcctctcgggcgtgctctac
gtgctcgacgaaccgtccatcggcctccaccagcgcgacaacgaccgcctcctcgaaacc
ctcaagcggctgcgcgatctcggcaacaccgtgatcgtcgtcgaacacgacgaggacgca
atccgcaccgccgaccacgtggtcgatcttggccccggcgcgggcgtccacggcggcgag
atcgtcgcgcagggtacgctcgacgatatcctgtccaacccgaacagcctcaccggccag
tacctcaccggcgcgcgccgcatcgaggtcccggcgcaccgccgccctggcaacggcctg
tacatcggcgtcgaaggggcgcgcgccaacaacctccagaacgtcagcgcgaagatccct
ctcggcaccttcacctgcgtcaccggcgtctccggctcgggcaagtcgagcttcacgatc
gacaccctccacgccgttgccgcccgcacgctcaatggcgcgcgcgtgatcgccggcgcg
cacgaccgcgtcaccggcctcgaacattgcgacaaggtgatcgagatcgaccagtcgccc
atcggccgcaccccccggtcaaaccccgccacctacaccggcgccttcaccctgatccgc
gactggttcgccggactgcccgaatccgccgcgcgcggctacaaggccggtcggttcagc
ttcaacgtcaagggcggccgttgcgagaagtgccagggcgatggcctgatcaagatcgag
atgcacttcctgcccgacgtctacgtcacctgcgaggagtgcgacggcaagcgctacaac
cgcgaaacgctcgaggtgaagttcaagggccactccatcgccgacgtgctcgacatgacg
atcgaggacgccgaggagttcttcaaggccgtccccccgatccgcgaccggatgcacatg
ctcaacgaagtgggcctgggctacgtcaaggtcggccagcaggcgacgacgctaagcggc
ggcgaggcccaacgcgtgaaactcgccaaggaactcgcccgccgctccaccgggcagacg
ctctacatcctcgacgaacccaccaccggcctccacttcgaagacgtgcgcaaactgctc
gaagtcctccaccgcctcgtcgaacagggcaacagcgtggtcgtgatcgaacacaacctc
gacgtgatcaagaccgccgactggatcatcgacctcggccccgaaggcggcgtgcgcggc
ggcgaaatcgtcgccgaaggcactcccgaacaggtggccaagaacccgcgcagcttcacc
ggccaatacatggcccccctgctgaaacgctga
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