Novosphingobium aromaticivorans: Saro_1337
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Entry
Saro_1337 CDS
T00322
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
nar
Novosphingobium aromaticivorans
Brite
KEGG Orthology (KO) [BR:
nar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nar03016
]
Saro_1337
Enzymes [BR:
nar01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
Saro_1337
Transfer RNA biogenesis [BR:
nar03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Saro_1337
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
ABD25781
UniProt:
Q2G8P2
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All DBs
Position
complement(1377746..1378963)
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AA seq
405 aa
AA seq
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MKIHPLITTTEALADLCERLAKADFVTVDTEFMRENTYWPELCLVQIADDKEAAAIDPLA
PGLDMSPLLDLLVDNEDVLKVFHAGGQDVEIIYNLTGKTPHPIFDTQIAMMAVSQSEQIG
YSNLVESWLGLSIDKGARFTDWSRRPLTERQIEYAIGDVTHLSKIFPKLLKRLIKTGRGE
WLDIEMEKLADPENYRTDMDTVWQKIRAPSRNPAVLGRLKSLAAWREREAMDKNIPKGRI
MRDETLADIASHPPREQHDLAKVRGLSAGWKDNDIGRRLMQTLADSKPLTDAEMPPKAPR
GAPLGKEGALVADLLKLLLKIRSREIDIAARLLARTDDLELLAAGQRRNLPILEGWRFEQ
FGRDALELVEGKLAFAVVNGKLKMAHIDDIGGSSEEPEVVVHVDE
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
atgaagatacatcccctcatcactacgaccgaagccctcgccgacctttgcgagcgactt
gcgaaagccgatttcgtcaccgtcgacaccgaattcatgcgcgagaacacctattggccg
gaactgtgcctggtgcagatcgcggacgacaaggaagccgccgcgatcgatccgctggcg
ccgggcctcgacatgtcccccctgctcgacctgctggtcgacaacgaggacgtgctcaag
gtcttccacgccggggggcaggacgtggagataatctacaacctgaccggcaagaccccg
cacccgatcttcgacacgcagatcgcgatgatggcggtcagccagtccgaacagatcggc
tattccaacctagtcgagtcatggctcggcctgtcgatcgacaagggcgcccgcttcacc
gactggtcgcgtcgccccctgaccgaacgccagatcgaatacgccatcggcgacgtcact
cacctttcgaagatcttccccaagctgctcaagcgcctgatcaagacaggccgcggcgaa
tggctcgacatcgagatggaaaagctggccgatccggagaactaccggaccgacatggac
accgtctggcagaagatccgcgcccccagccgcaaccccgccgttctcggccggctcaag
tcgctcgccgcctggcgcgaacgcgaggcgatggacaagaacattcccaagggccgcatc
atgcgcgacgagacgctggccgacatcgccagccatcccccgcgcgaacagcatgacctt
gcaaaggtgcgcggcctttccgctggctggaaggacaacgacatcggccgccgccttatg
cagacgcttgccgattcgaagccgctgaccgacgccgaaatgccgcccaaggctccgcgc
ggcgccccgctcggcaaggaaggcgcgctggtggccgacctgctgaagctgctgctcaag
atccgcagccgcgagatcgacatcgccgcccgcctcctcgcccgcaccgacgacctcgaa
ctgctggccgccggacaacgcaggaacctgccgatcctcgaaggctggcgcttcgaacag
tttggccgcgacgcgctagaactggtcgagggcaagctcgccttcgcggtcgtgaacggc
aagctcaagatggcgcacatcgatgacatcggcggttcgtcggaagaacccgaagtcgtc
gtccacgtggatgaataa
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