Novosphingobium aromaticivorans: Saro_1355
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Entry
Saro_1355 CDS
T00322
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
nar
Novosphingobium aromaticivorans
Brite
KEGG Orthology (KO) [BR:
nar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nar03019
]
Saro_1355
Enzymes [BR:
nar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Saro_1355
Messenger RNA biogenesis [BR:
nar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Saro_1355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
CON_HrpB
AAA_30
Flavi_DEAD
HA2_N
Cas3-like_C_2
AAA_19
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ABD25799
UniProt:
Q2G8M4
LinkDB
All DBs
Position
1400714..1403167
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AA seq
817 aa
AA seq
DB search
MSDLPIHSVLPDLLAALRQRESAVLIAPPGAGKTTAVAPALLAEPWCTGQVIVLSPRRVA
ARAAAERMAEMLGEEAGGTIGYVTRLDSRRSARTRVLVVTEAIFVATILDDPELSGVSAV
LFDEAHERHLDSDLGLALAVEAQGVLREDLRIVVMSATIDGSRFAALLGDAPVIESEGKA
HPLAIRWLGARPDAKVEVAMASAIQTAWREEEGDILAFLPGVAQIERTAETLAERLPQAL
ILPLHGQVEPGGQRAAIRRDPSGRRRIVLATAIAETSLTLDGVSVVVDAGLSRRAEFDKA
AGVTRLVTTRASQASAAQRAGRAARQGPGVAYRLWEEASHAGRPAFDPPEMVTSDLAPLA
LTLAQWGAGDPATMAWLDPPPAAAMAAAQGALAALGALDKDRRITTHGRAMAKLPMEPAL
AHMLLFAAERGQAEEAARLALLLQERGLGGRGEDLARRLDRWASERGSRAEASRKLAGRW
ARMAERLAPRGRAGEVPTGVLLAEAFPDRIARARSVSGEEWLSSGGRGYRLDPASPLATA
RWLVIGDAQGEAKGARITAAAALEESDVTRHLAHRVEERHTLSWNAADGRVEARLERRLG
AIVLARVPDPAPDAEAAARLLIDEVRSRGLDLLPLGEGAKALLVRAGHAGLAALSDAALL
DDLEAWLLPLVKGRRDLAVGAGRLHDALLGRLDWNERQMLDKLAPAEFRSPAGTSHAIDY
GHEGGPCVELRVQALFGIDRHPCVGQPPRPLLLSLTSPGGKPIQTTADLPGFWRGSWKDV
CKDMKGRYPKHRWPDEPWSEDPSLKTKNAFNAQKGRT
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgacctgccgatccattccgtcctgccggacctgcttgccgcgctgcgccagcgg
gagagcgcggtgctgatcgcgccgcccggcgcgggaaagaccactgcggtggcgcccgcc
ttgctggcggaaccctggtgcaccgggcaggtcatcgtgctgtcgccccgccgcgttgcc
gcgcgcgcagcggccgagcgtatggccgagatgctcggcgaagaagcgggcggcaccatc
ggctacgttacccggctcgacagcaggcgttcggcacggacacgggtgctggtggtgacc
gaggcgatcttcgtcgccacgattctggatgatcccgaactgtccggcgtttcggcggtg
ctctttgacgaagcccacgaacgccacctcgatagcgaccttggcctcgcgctcgcggtg
gaggctcagggtgtgcttcgcgaggacctgcggatcgtcgtgatgtcagccacgatcgac
ggctcccgcttcgccgcgctgctgggcgatgcgccggtgatcgagagcgagggcaaggcc
catccgctcgcgatcaggtggcttggcgcccggcccgacgcgaaggtcgaggtggcgatg
gcctcggcgatacagacggcatggcgcgaggaggagggcgacatcctcgccttcctgccc
ggcgttgcccagatcgaacggaccgcagagactctggccgaacgccttccgcaggcgctg
atcctgccgctgcacggacaggttgagcccggcggccagcgcgcggcaatccggcgcgat
ccctccggacgtcggcgcatcgtgctggccactgcgattgccgaaacgtcgctgacgctg
gatggcgtgtccgtggtggtggacgccgggctgtcgcgccgggcagaattcgacaaggca
gcgggagtcacgcgccttgtcaccacgcgggcgagtcaggcatcggctgcccagcgcgcg
ggtcgcgcggcgcggcaggggccgggcgttgcctatcgactgtgggaagaggcgtcccac
gcgggccgtccggcgttcgacccgcctgaaatggttaccagcgaccttgcgccgctggcg
ctcacactggcgcagtggggcgcgggcgatccggccacgatggcctggcttgatccgccc
ccggctgctgccatggcggcggcccaaggtgcgctggcggcgttgggtgcgctcgacaaa
gacaggcggatcaccacgcatggccgcgcgatggcgaagctgccgatggagccggcgctg
gcccatatgctccttttcgccgccgagcgcgggcaggcagaggaggcggcgcggcttgcg
ctgctgttgcaggaacgtggccttggcggacgcggcgaagacctcgcgcggcggctggac
cgctgggcgagcgagcgcggcagccgtgccgaggcttcgcgcaagctggcggggcgctgg
gcgcgcatggctgagcgactcgccccgcgcggcagggcaggcgaggtgccgaccggcgtt
cttctggccgaggcattccccgatcgtatcgcgcgcgcgcgttcggtttcgggcgaggaa
tggctgtcgtctggcgggcgcgggtatcgcctcgaccctgcctcgcctcttgcgaccgcc
cgctggctggttattggcgatgcccagggtgaggcgaagggcgcgcggatcaccgcagcg
gcggctctcgaggaaagtgatgtcacccgccacctcgcgcaccgggtcgaggaacgccat
acgctgtcgtggaacgcagcggacggccgtgtcgaagcgcggctggagcggcggctgggc
gctatcgtgctggcacgcgtgcccgatccagcgcccgatgcagaggccgcggcgcggctc
ctgatcgatgaagtgcgctcgcgcgggctggatcttctgccgctgggggagggcgccaag
gcgctgctcgtgcgggcgggccatgccggccttgcggccttgtcggacgccgccttgctg
gacgatctggaggcgtggctactgccgctggtgaagggcaggcgggatctggcagtcggg
gctggcaggctgcacgatgcgctgctggggcggctggactggaacgaacggcagatgctc
gacaagctggcacctgccgagttccgatctcccgcggggacgagccatgcgatcgactat
ggccacgagggcggaccttgcgtggaactgcgcgtgcaggcgctgttcgggatcgaccgg
catccttgcgtgggccagccgccgcgcccgttgttgttgagcctgaccagccccggcggg
aagccgatccagacgacggcggacctccccggcttctggcgcgggtcgtggaaagacgtc
tgcaaggacatgaaggggcgctatcccaagcaccgctggcccgacgaaccgtggagcgag
gaccccagcctgaagacgaagaacgccttcaatgcacaaaagggccggacctga
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