Novosphingobium aromaticivorans: Saro_3251
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Entry
Saro_3251 CDS
T00322
Name
(GenBank) 3'-5' exonuclease
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
nar
Novosphingobium aromaticivorans
Brite
KEGG Orthology (KO) [BR:
nar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nar03016
]
Saro_3251
Enzymes [BR:
nar01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
Saro_3251
Transfer RNA biogenesis [BR:
nar03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Saro_3251
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNase_H_2
BE_C
Motif
Other DBs
NCBI-ProteinID:
ABD27686
UniProt:
Q2G387
LinkDB
All DBs
Position
complement(3471052..3471669)
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AA seq
205 aa
AA seq
DB search
MAVFLHEEDLPEGALAPGAVAVDTETMGLITPRDRLCVVQISDGRGDEHLVRFSPGSAFA
APNLKAVLADPERLKLYHFARFDLAAIEHYLGVVAAPVFCTKIASKLVRTYTDRHGLKDL
VRELLGKEISKQQQSSDWGAPTLTDAQQEYAASDVRHLHAMHTILVERLEREGRTAMAQA
CFDFLPMRARLDLAGWAERDIFSHE
NT seq
618 nt
NT seq
+upstream
nt +downstream
nt
atggccgttttcctgcatgaagaagacctgcccgaaggcgctctggcgcccggcgcagtg
gcagtcgataccgagacgatggggctgatcacgccgcgcgaccgtctttgcgtggtccag
atatcggacgggcgcggagacgagcatctcgtccgcttctctcccggcagcgcgttcgcg
gcaccgaatctcaaggcggtactcgccgatccggagcgcctgaagctctatcatttcgcg
cgcttcgacctggcggcgatcgagcactacctcggcgttgtggccgcacccgtgttctgc
accaagatcgcatccaagctggtgcgtacctataccgaccgccatggcctgaaggacctt
gtgcgcgaactgttgggcaaggaaatctccaagcagcagcagtcgagcgactggggcgcg
ccgacgctgaccgatgcgcagcaggaatacgccgcgtccgacgtgcggcacctgcacgcg
atgcacaccatcctggtggaacggcttgagcgcgagggccgcactgcaatggcgcaggcc
tgtttcgacttcctgccgatgcgcgcgcgcctcgatctcgccggctgggccgagcgcgac
atcttcagccacgagtaa
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