Candidatus Nitrotoga arctica: NTG6680_0280
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Entry
NTG6680_0280 CDS
T08244
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
narc
Candidatus Nitrotoga arctica
Brite
KEGG Orthology (KO) [BR:
narc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
narc03019
]
NTG6680_0280 (hrpA)
Enzymes [BR:
narc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
NTG6680_0280 (hrpA)
Messenger RNA biogenesis [BR:
narc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
NTG6680_0280 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
AAA_23
T2SSE
NTPase_1
DUF3318
NACHT
nSTAND3
FtsK_SpoIIIE
AAA_30
ResIII
AAA_25
SRP54
Motif
Other DBs
NCBI-ProteinID:
CAG9931533
LinkDB
All DBs
Position
Ntg6680:300261..304019
Genome browser
AA seq
1252 aa
AA seq
DB search
MTDRQSHPIHAGSFQARRAARIELLAPIEFPLDLPVVLRREELAQAIVANQVIIVCGETG
SGKTTQLPKICLSLGRGVQGVIAHTQPRRVAARSVATRIAFELKTELGGVVGYKIRFNDK
VSADTCIKLMTDGILLAEIQSDRLLKKYDTIIIDEAHERSLNIDFLLGYFKQLLPRRRDL
KLIITSATLDAERFAKHFSGAPIMLVSGRSYPVEVRYRPLQENAEGEMQDIPQAVCAALD
ELAVDGLRGDILVFLPGEREIRDTAEALRKHHPIGVEILPLFSRLSAAEQDRVFKTSGMR
RVVLATNVAETSLTVPNIGYVIDSGLARINRYSIRQKVEQLRVEKIARAAANQRAGRCGR
VMSGICVRLYDEPDFLARTEYSDAEIFRVSLATVILRMSALGLGEVEQFPFIEPPGSRSI
ADGYQLLAQLNAINEERQLTPLGRELAKLPLDPKIARLLLAGRQYHCLQEILIIASALSL
QDPRDRPSEWRKAADDAHQRFNDERSDFLAYVNLWAWFQEAVKHKKSKRLWANECREKFL
SPLRLREWHELYQQLHAQVAEMGMRLNEIPASYEEIHKALLTGLLGNVGCKSVDREAHYQ
GAREIKFFIVPNSVLAKKSPKWVVAAELTETTKLYARCVARIEPEWLEEVGAHLIKRHYF
DPHWEKKAAQVVAFERSTLYGLIINPKKRVHYGPMNVPESRAVFIRQALMAGEFHTLAPF
FSHNQKLIQDIEALEHKARRPDVLVDDELIFAFYDSIIPPHIYNGAAFEAWRKEAERANP
RLLYLQRDDLMRHEAAGITTDQFPPQLVMNNISYALAYHFVPGKSDDGVNLTVPLALINQ
VSAPRCEYLVPGLLAEKVTQLVKTLPQKLRRHLVPVPEFAALFCREVPPSDTPLLQALAR
YIREQKQFEVLLDAFRLEQLPAHLLMNFYVVDEHGRQLGVSRNFIQLRAELAPKLAPAAA
KGAAAEQKRVRFIDWSMDEDGLGGFKETSEIHRAGQVVTLFNALVDENDAVSLRTFDTRD
EALSAHRIGLRRLFMLALKDQVKFLEKNLGLQAMAMQFLSFGSIQDLRRQILAVTFDRCC
MNEPWPTNETEFTARCKEAKSRLTLVAQEIARLIGEILSEYQLVHKKIQAAKSNGQAVQD
MRMQYEWLLQKEFIARIPYERLQHLSRYLKAINVRLEKLRVDAARDARQYTQMQSLQQAW
QRKLTAQQGNIDARMEEFGWLLQELRVSLFAQELKTPVIVSVKRLEKLWEQM
NT seq
3759 nt
NT seq
+upstream
nt +downstream
nt
atgactgaccgccaatcccaccccattcacgctggatcttttcaagctcgtcgtgcggca
cgtattgaattgcttgctcccatcgagtttccgcttgacctgccggtagtattgcggcgc
gaagaattagcgcaagccatcgttgccaatcaggtgatcatcgtatgcggtgaaactggt
tctggtaaaaccacgcagttacctaaaatctgtttgagtctcggtcggggtgtgcaaggc
gtcattgcccacactcagccacgccgtgtcgcggcgcggtctgtggcaacgcgcattgcg
tttgaactgaaaaccgagttgggtggcgtagtgggctataagattcgctttaatgacaag
gtatcggcggatacctgcatcaagctgatgactgatggtattttgctggcggaaatccag
agcgatcggctgctaaaaaaatatgacaccatcattatcgatgaggcgcatgagcgcagc
ctgaatatcgattttctgttgggttacttcaagcagctgttaccacgccgtcgtgatctc
aagctcatcattacttctgccacgctggatgcggagcgcttcgctaagcatttcagtggt
gccccgatcatgctggtcagtggccgcagttatccggtggaagtacgttaccgtccgttg
caggagaatgccgaaggcgagatgcaggatattccacaggcggtgtgtgctgcgttggac
gaactggcagtggatggcttacgcggcgacattttggtattcctaccgggagaacgcgaa
atccgcgacactgcggaagctttgcgcaagcatcatcccattggcgtggaaattttgccg
ctgttctcgcgtctgtcggcggcggagcaggatcgcgtattcaaaacttccggcatgcgc
cgggtcgtgctggccaccaatgtcgcggagacttccttaaccgtaccgaatatcggatat
gtgatcgacagcgggctggctcgcatcaatcgttacagcatacggcaaaaagtcgagcaa
ttgcgcgtggagaaaatcgcgcgtgccgccgctaaccagcgcgccgggcgttgtgggcgg
gtgatgagcgggatatgcgtgcgtctgtatgacgagccggatttcctggcgcgcacagaa
tattccgatgcggaaattttccgtgtgtcattggcaacagtaatattgcgtatgagtgcg
ctgggcttgggcgaagtcgaacaatttccattcatcgagccgcccggatcgcgatcaatt
gccgatggctaccagttgctggcgcaattgaatgcgataaacgaagagcggcagctgacg
ccgctgggacgcgagctggcaaagctgccgctcgacccaaaaatcgcacgcctgctgctg
gcgggaaggcaatatcactgcctgcaggaaattctcatcatcgccagcgcgctatcattg
caggatccgcgtgaccgtccctcggagtggcgcaaagcggcggatgacgcgcatcagcgt
tttaatgatgagcgctcggattttctggcctatgtgaatttgtgggcatggtttcaagag
gcggtgaagcataaaaaatccaagcgcctgtgggcaaatgaatgccgcgagaaattctta
tcgccactgcgtctgcgcgaatggcatgagctgtatcagcagttgcacgcgcaagttgcc
gagatgggcatgcggctgaatgaaattcctgccagctatgaggaaatccacaaggcgctg
ttaacgggtctgctgggtaatgtcggctgcaagagcgtggaccgcgaagcgcattatcag
ggcgcgcgcgaaataaaattttttatcgtgccgaattcggtgctggcgaaaaaaagccca
aaatgggtcgtggcagcagaattaaccgagacgacgaaattgtatgcccgttgtgtggcg
cgcatcgaaccggaatggctggaagaagtgggtgcgcatctgatcaagcgccactatttt
gatccgcactgggagaagaaggcggcacaggtagtggcattcgaacgcagcaccttgtat
ggcctgattattaacccgaaaaaacgcgtgcattacggcccgatgaatgtgccggaatcg
cgcgcggtgtttattcgccaggctttaatggcgggcgaatttcatacactcgcgcccttt
ttctcgcacaatcagaaattaatccaggacattgaggcgctggagcataaggcgcgccga
ccggatgtgctggtagatgacgaattgatttttgccttttacgatagcatcatcccgccg
cacatttacaatggcgcggcattcgaggcatggcgcaaggaggcggaacgcgccaatccg
cgcctgctgtatctccaacgtgacgacctgatgcggcacgaggcagcaggtatcaccacc
gatcagttcccaccgcaactggtgatgaacaacatcagctatgcactggcttatcatttt
gtgccgggcaagagcgacgatggtgtgaatctcaccgtgccgctggctctgattaatcaa
gtatccgctccgcgttgcgagtatttggtgcccggcttgctggcagaaaaagtgacgcaa
ttggtaaagactttgccgcagaagctgcgccgccatttggtgccggtgccggaattcgct
gccttgttttgtcgtgaggtgccgccctcggatacgcccctgctgcaggcattggcacgc
tatattcgcgaacaaaaacaatttgaagtactactggatgcatttcggttagagcaattg
ccggctcacctgctcatgaatttttatgtagtagacgagcatggcagacagttgggggtt
tcgcgcaatttcattcagttgcgtgccgagcttgcacccaagcttgcgccggccgctgca
aagggagcagccgcagaacaaaagcgggtacgttttatcgattggagtatggatgaagat
ggtttgggtggatttaaggaaacttcagaaattcaccgcgcaggacaagttgtaacgcta
ttcaacgccttggtggatgaaaacgatgcggtatctttacgaacattcgatacccgcgat
gaggcgctgagtgcccatcgtatcggattacggcgcttatttatgctggcgctcaaggat
caggttaaatttctggaaaaaaatcttggcttgcaagcaatggcaatgcagttcttgtcc
ttcggcagcattcaggatttgcgacgccagattttggctgtaacctttgatcgctgttgt
atgaatgaaccttggccaacaaatgaaaccgaattcactgcgcgttgcaaggaagccaag
agccgtttgacgttggtggcgcaggaaatcgcgcggttgatcggtgaaatcctgagcgaa
tatcaactcgtacacaaaaaaatacaagctgccaaatccaacgggcaagccgtccaggat
atgcgcatgcagtacgaatggctgttgcaaaaggagtttatcgcacgcattccttacgaa
cgtttacagcatctgtcacgctatctaaaagcgatcaatgtgcgattggaaaagctgcgc
gtcgatgcggcacgtgatgcgcgtcaatacacgcaaatgcaatccttgcagcaggcttgg
caacgcaaattaactgcgcagcaaggcaatatagatgcgcggatggaagagtttggttgg
ctattgcaggaattgcgcgtgtcgttgtttgcgcaggaattgaagacgcccgtgattgtg
tcggtgaagcggctggaaaagttgtgggagcagatgtag
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