Candidatus Nitrotoga arctica: NTG6680_2561
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Entry
NTG6680_2561 CDS
T08244
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
narc
Candidatus Nitrotoga arctica
Pathway
narc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
narc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NTG6680_2561 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
narc03019
]
NTG6680_2561 (rhlE)
Enzymes [BR:
narc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NTG6680_2561 (rhlE)
Messenger RNA biogenesis [BR:
narc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NTG6680_2561 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HI1480
AAA_19
P-loop_SecA
AAA_22
CMS1
UvrD_C
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
CAG9933810
UniProt:
A0ABN8ATZ2
LinkDB
All DBs
Position
Ntg6680:2695270..2696613
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AA seq
447 aa
AA seq
DB search
MTFSALGLSDEIVRAVTERGYTEPTPIQAQAIPVVLSGGDLLAGAHTGTGKTAGFTLPIL
QRLTASAKPVTGKAPIRALVLIPTRELAAQVEESVRDYGKYLKLTSMTMIGGVNINPQIQ
RLKSRVDILVATPGRLLDHLQQKTLDLSHIEILVLDEADRMLDMGFIRDIKKILAILPRQ
RQNLLFSATFSDEIKMLADGLLNKPAMIEVARRNATAELITQKIYPVDRERKRELLTHLI
KEYNWHQVLVFTRTKHGANKLAEQLNKDDIPALAIHGNKSQAARTRALAEFKTGKLQVLV
ATDIAARGIDIIELPHVVNFEMPNVSEDYVHRIGRTGRAGSEGEASSLVCIDEHKLLGDI
ERLTKREIPVVQIPGFEPDPRIKAEPILNGQNRGQGGERKQGQGRSRTPRAAPRAGGGQG
RTSVATATTGKPVARKPVSHRSGGYNR
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atgactttctcagctctcggtttgtccgatgaaatcgtccgcgccgttaccgagcgtggt
tacactgaaccgacgcccattcaggcgcaggccatcccggttgtgctatccggcggcgac
ctgctggctggtgcacatactggcaccggcaagactgctggtttcaccctgcctatcctg
caacgtcttactgcttctgccaaacctgtaaccggtaaggcaccaattcgcgcgttagtt
cttatccctacgcgcgagcttgccgcacaggtagaagagagcgtgcgcgattatggcaaa
tacctgaaacttacctcgatgacaatgattggtggcgttaacattaatccacaaatacag
cgcttaaaaagccgtgtggatattttagttgccacacctggccggctgctcgatcacttg
cagcagaaaacgttagatctgtcgcatatagaaatactggtgctggatgaagccgaccgc
atgctggacatgggcttcattcgcgacatcaaaaaaatcttggctatattgcccaggcag
cgacaaaacctgttgttttccgctaccttctccgacgaaatcaaaatgctggccgatggg
ctgctcaataaaccggcgatgatagaagtggcgcgccgcaacgctactgcagaactgatc
acgcagaaaatttacccagtggatcgcgaaagaaagcgtgagttgcttacccatcttatc
aaggaatataactggcatcaggtgctggtgtttacacgcaccaaacacggtgccaacaag
ttagctgaacaactcaataaggacgacattccagcgctggccatccatggcaataagagc
caagcggcacgcactcgcgcattggcagaatttaaaaccggcaaactacaggtgctagtg
gcaactgacattgctgcgcgtggcatcgacatcattgaattgccacacgtggtcaacttc
gagatgcccaatgtatcggaagattatgtccaccgcattggacgcaccggtcgcgcaggc
agcgaaggcgaggcgagttccctggtatgtattgatgaacataagctgctgggggacatt
gagcgactgaccaagcgcgaaattccggttgtgcaaatacccggcttcgagccagatcct
cgcatcaaagcagagcctattttaaacggtcagaatcgcggtcaaggtggggagcgtaag
caagggcaaggtcgaagtcgtactcctcgggcagcgccgcgtgcgggcggtggtcaaggc
cgcaccagtgttgctactgctactactggtaaacctgttgcccgcaaaccggtatcacac
cgttccggtggctacaatcgctaa
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