Neopusillimonas aromaticivorans: N7E01_08350
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Entry
N7E01_08350 CDS
T09541
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
narm
Neopusillimonas aromaticivorans
Pathway
narm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
narm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
N7E01_08350 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
narm03021
]
N7E01_08350 (rpoC)
03400 DNA repair and recombination proteins [BR:
narm03400
]
N7E01_08350 (rpoC)
Enzymes [BR:
narm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
N7E01_08350 (rpoC)
Transcription machinery [BR:
narm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
N7E01_08350 (rpoC)
DNA repair and recombination proteins [BR:
narm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
N7E01_08350 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
WJJ94856
LinkDB
All DBs
Position
complement(1534868..1539121)
Genome browser
AA seq
1417 aa
AA seq
DB search
MKALLDLFKQVSQDEQFDAIKIGIASPEKVRSWSYGEVRKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTVAKVRRERMGHIELASPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAWCVIEPGMTPLKRGQIMSDDDYLAKTEEYGDDFHALM
GAEAVRELLRTIDIDREVDTLRAELKATSSDAKIKKISKRLKVLEGFQKSGIKPDWMVME
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPDIILRNEKRMLQ
ESVDSLLDNGRRGKAMTGANKRQLKSLADMIKGKSGRFRQNLLGKRVDYSGRSVIVVGPQ
LKLHQCGLPKLMALELFKPFIFNRLEMMGLATTIKAAKKLVESQEPVVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQLEA
RTLMLASNNVLFPANGEPSIVPSQDIVLGLYYTTRERINGKGEGMFFADVGEVQRAYDLG
EVELQTRITVRLNEYEKDATGEFQPVLRRHETTVGRALLSEILPHGLPFSTLNRALKKKE
ISRLINQSFRRCGLRATVIFADKLMQSGFRLATRGGISIAMNDMVIPTVKEEILAQASSE
VKDIDKQYSSGLVTAQERYNNVVDIWGKAGDKVGKAMMEQLATEPVIDRHGNEVRQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVTQDLVITETDCGTSHGYTMKALVEGGEVIEPLRERIL
GRVTAADIVNPDTQETVIVANTLLDEDLVDVIDSLGVDEVKIRTPLTCETRRGLCAHCYG
RDLGRGSLVNRGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAMASSVETKSAGTVSF
AATMRYVTNAKGERVAISRSGEIVIFDDNRRERERHKIPYGATVVVGDGASVKAGERLAT
WDPLTRPIISEYAGIVRFENIEEGATVAKQVDEVTGLSTLVVITPKTRTGKTMMRPQIKL
LNEAGDEIKIAGTDHSVNISFPVGALITVRDGQQVNVGEVLARIPQESQKTRDITGGLPR
VAELFEARSPKDAGMLADVTGTVSFGKDTKGKQRLVITDMDGISHEFLIPKEKQVLVHDG
QVVNKGEMIVDGPSDPHDILRLQGIERLATYIVNEVQDVYRLQGVKINDKHIEVIVRQML
RRVNIVDSGDTSFINGEQVERSELLNENDRMEADGKIPATYDNVLLGITKASLSTDSFIS
AASFQETTRVLTEAAIMGKRDDLRGLKENVIVGRLIPAGTGMSYHMARKAKEKHEEAERL
AARAQANPFEDAPVTVDVAPEADSADTGTTENGGTEE
NT seq
4254 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcgctactcgacctattcaaacaagtctcgcaagacgagcaattcgacgccatc
aaaattggcattgcatcgcccgaaaaggtacggtcgtggtcatacggcgaagttcgcaag
ccggaaaccatcaactaccgtacgttcaaacccgagcgtgacggcctgttttgcgcgaag
atttttggtcccatcaaagactatgaatgtctttgcggcaagtacaagcgcctgaagcac
cgcggtgtcatttgcgaaaagtgcggcgttgaagtcacggtggccaaagtgcgtcgtgaa
cgcatgggccacatcgaactggccagcccggttgcgcatatctggttcctcaagagcctg
ccgtcgcgcctgggcatggtgctcgacatgacactgcgcgatatcgaacgcgtgttgtac
tttgaagcatggtgcgtcattgaacccggcatgaccccgctcaagcgcggccagatcatg
tccgatgacgattacctggctaaaaccgaagaatatggtgacgacttccacgccctgatg
ggcgcggaagccgtgcgtgaactgctgcgcaccatcgatatcgaccgcgaggtcgacacc
ttgcgtgccgagctcaaggccaccagttccgatgccaagatcaagaaaatctccaagcgt
ctcaaagtgcttgaaggtttccagaaatcgggcatcaagcccgactggatggtcatggaa
gtgctgccggtactgccacccgacctgcgtccgctggtgccgctggatggcggccgcttc
gccacgtccgacctgaatgatctgtaccgtcgcgtcatcaaccgtaacaaccgtctgaag
cgtctgcttgaactgaaagcacctgacatcatcttgcgcaacgaaaagcgcatgctgcaa
gagtcggttgattcgctgctcgataacggtcgtcgcggcaaggccatgacaggcgccaac
aagcgccagctcaagtcgctggccgacatgatcaaaggtaaaagcggtcgtttccgtcag
aacctgctgggcaagcgcgtcgattattcgggtcgttcagttattgtggtgggcccgcag
ctcaagttgcaccagtgcggtttgcccaagctcatggctctggaactgttcaagcctttc
attttcaatcgtcttgaaatgatgggtctggccacgactatcaaggctgccaagaaactg
gttgaaagccaggaacctgtggtctgggatattctcgaagaagtcattcgtgaacacccg
gtcatgctgaaccgtgcacctacgttgcaccgcctgggcatccaggccttcgagccggtc
ctgattgaaggtaaagcgattcagctgcacccgctggtatgtgctgcgttcaacgccgac
ttcgacggtgaccagatggccgttcacgtgcccctgtcactcgaagcccagcttgaagcc
cgtaccttgatgctggcatcaaacaacgtgctgttccccgccaacggcgaaccgtccatc
gtgccgtcacaggatatcgttctgggtctgtactacaccactcgtgagcgtatcaacggc
aagggcgaaggcatgttctttgccgacgtcggtgaagttcagcgtgcctacgacctgggt
gaggtcgaactgcaaacccgtattactgttcgtctgaacgaatacgaaaaagacgcgaca
ggtgaattccagccggtattgcgtcgtcacgagaccacggtgggtcgcgcgctgttgtcc
gaaattctgccgcatggtttgccgttctcgacactgaatcgtgcgctgaaaaagaaagaa
atttcgcgtctcatcaaccagtcgttccgtcgttgcggtttgcgcgctacggttattttt
gccgacaagctcatgcagtccgggttccgtctggcaacacgtggcggtatttccatcgcc
atgaacgacatggtcattccgaccgtcaaggaagaaatcctggctcaggccagttccgag
gtcaaagacatcgacaagcagtactcgtcgggtctggtcacggcccaggaacgctacaac
aacgtggttgacatctggggcaaggccggcgacaaggtcggcaaggccatgatggaacaa
ctggcgaccgagccggtcatcgaccgtcacggtaacgaagttcgccaggagtccttcaac
tccatctacatgatggctgactcgggtgcgcggggttctgcagcccagatccgccagctg
gcaggtatgcgtggcctgatggccaagccagacggctccattattgaaacccccattacg
gcgaacttccgcgagggtctgaatgtactccagtacttcatttcgacccacggtgcacgt
aaaggtctggccgacacggcgctgaaaacagcgaactcgggttacctgacgcgtcgtctg
gttgacgtgacacaagatctggtcatcacggaaaccgattgcggcacatcacatggttac
accatgaaggcgctggtcgagggtggtgaggttatcgagccgttgcgcgagcgcattctg
ggtcgtgttactgcggctgacatcgtcaaccctgacacccaggaaaccgtcattgtcgcc
aatacgctgcttgatgaagacctggtcgacgtgatcgatagccttggtgttgacgaagtc
aaaatccgtacaccgctcacctgcgaaacacgtcgtggtttgtgtgcccattgctatggt
cgtgacctggggcgtggtagtctggttaatcgtggcgaggccgtcggtgtcattgcggcg
cagtcgatcggtgagcccggtactcagctgaccatgcgtacgttccacatcggtggtgcg
gcatcgcgtgcggccatggcaagctcggttgaaacgaagtctgccggtacggtctcgttt
gccgccaccatgcgctatgtaaccaacgccaaaggcgagcgtgtggctatttcccgttcg
ggtgaaatcgtcatttttgacgataaccgtcgcgaacgtgaacgtcacaagattccgtac
ggtgccaccgtggtggtgggtgacggcgcgtcggtcaaggccggcgagcgtcttgcgacc
tgggatccgctcacccgtccgatcatctccgagtacgcgggtattgtccgcttcgaaaac
atcgaggaaggcgcaaccgttgccaagcaggttgacgaagtcaccggcttgtccacattg
gtggtgatcacacccaagacgcgtacgggcaagaccatgatgcgtccgcagatcaagttg
ctgaatgaagccggcgatgagatcaagattgcgggtaccgatcactccgtgaacatttca
ttcccggttggtgcactgatcacggttcgtgatggccagcaggttaatgttggtgaggtt
ctggcgcgtattccccaagaatcgcaaaaaacccgcgacattaccggtggtctgccacgt
gtggccgaactgttcgaagcccgttcacctaaagatgccggtatgttggccgatgtcacg
ggtacggtttcgtttggtaaagacaccaagggcaagcagcgtctggttattaccgacatg
gacggcatcagccacgagttcctgattccgaaagagaaacaggttctggtgcacgacggc
caggtggtgaacaaaggcgaaatgattgttgacggcccgtccgacccgcacgatattctg
cgtctgcaggggatcgagcgtctggccacctacatcgtcaatgaagtgcaagacgtttac
cgtctgcagggtgtgaagatcaacgacaagcacatcgaagtgatcgtgcgtcagatgctg
cgtcgtgtgaacatcgttgattcgggcgataccagcttcatcaacggtgaacaggtcgaa
cgttctgaactgctcaacgaaaacgatcgtatggaagctgacggcaagatccctgcaacg
tacgataacgttttgctgggtattaccaaggcttcgttgtcgaccgactcgttcatttcg
gcggcgtcgttccaggaaaccacacgcgtgcttaccgaagccgccattatgggcaagcgc
gacgatttgcgtggtctcaaggaaaacgtcattgtgggtcggcttatcccggcgggtacc
ggtatgtcgtaccacatggcgcgcaaggccaaagaaaaacacgaggaagccgaacgtctg
gcggcccgtgcacaggccaaccccttcgaggacgcccctgtcacggtcgatgttgcaccg
gaagctgacagtgccgataccggcactacagaaaacggcggcaccgaagaataa
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integrated database retrieval system
