Neopusillimonas aromaticivorans: N7E01_13495
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Entry
N7E01_13495 CDS
T09541
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
narm
Neopusillimonas aromaticivorans
Pathway
narm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
narm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N7E01_13495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
narm03019
]
N7E01_13495
03009 Ribosome biogenesis [BR:
narm03009
]
N7E01_13495
Enzymes [BR:
narm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
N7E01_13495
Messenger RNA biogenesis [BR:
narm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
N7E01_13495
Ribosome biogenesis [BR:
narm03009
]
Prokaryotic type
rRNA processing factors
N7E01_13495
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Zn_ribbon_InsA
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
WJJ93091
LinkDB
All DBs
Position
complement(2454279..2457518)
Genome browser
AA seq
1079 aa
AA seq
DB search
MKRMLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVSY
GEDRHGFLPFKEVARTYFKDGVDVRTARIQDALTEGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRVEGEDRQELRETMDQLDVPQGMSIIARTAGIGRTVEELQ
WDLSYLLQLWSAIDSAARENAAPILIYLESSLVIRAIRDYFSPDIGEILIDTEDIAEQAT
AFMSVVMPDNVGCVKMYRDDIPLFSRFQIEHQIETAYSRTVQLPSGGSVVIDHTEALVAV
DVNSARSTRGADIEETALRTNLEAADEVARQLRLRDLGGLIVIDFIDMEDGKNQRAVEQR
LRDALHFDRARVQMGKISRFGLMELSRQRLRPALNEGSHVTCPRCNGTGVIRDAESSALH
VLRLLQEEAMKENTAALHAQVPVEVATFLLNEKRNDITKIESRLKVNLVLIPNKNLETPH
HHIERLRHDDPRIENPASSLELVQAPETDIAWQPSKAQEAKTRPEAIVKSITHAQPAPVV
VAPEAPAATAAPTAAGPGLFKRLLNWLTGSPASTEAAAPATEDKPAATRSANGQRASNRG
NQDRNRNRRRSGSNGRGRDTEETTAEAPAPRKARAEAPVAEPVTVAPADNGPDTAEGKEE
RSGSRRGRRGRGRNRRDRATEGNVDTDDNLIADNTDFQEATETQATTPKVAEAAPAVAVS
VAAVAATTAIAEEDDEDIDSTDSGTGSDDTEATDGEQTERKRRRRRSRRSRRGTDGSKLE
SGSDDAEGNDEGTDNDAEPVTPVAVQTAQTTIAATVTTSATTAPGSAASPDDVPASELIA
PRTIASETAATAQTFGADMETVPAKALIDLPATSAEPAIAAESADVPDTTSVTAKPASVT
TAPASVESASATENVEQVTSSGIAPAAAARSEPAPDTAATAAPVAAVTAPAQEPVASEPA
VAVAVPAEAVVAAEAVVAAEAVVATEPAVAVPEEVPVATPAVASTVAASAVTTASASAVP
SSNLSTVIEAAGLQLVETRAESRAAPAATPTAPARLGRPRKAAPVIEHASLEQVETQNS
NT seq
3240 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgttgttcaacgcgacgcaccaggaagaattgcgcgtcgcgattgtcgat
ggtcaaaaactcattgaccttgacatcgaaaccgccgggcgcgaacagcgcaaaggcaat
atttacaaaggcgtcatcacacgcatcgaaccgggtcttgaagcctgcttcgtcagctac
ggtgaagaccgtcatggcttcctgccgttcaaagaagtggcccgcacttacttcaaagac
ggcgttgatgtacgcactgcgcgcatccaggacgcactgactgaaggccaggaactgatt
gtccaggttgaaaaagaagagcgcggcaacaaaggcgccgcgctgacgaccttcatttca
ctggctggccgttacctggtcctgatgcccaacaatccgcgcggtggcggcgtctcgcgt
cgtgtcgaaggcgaagaccggcaagagctgcgcgaaaccatggatcagctcgatgtgccc
cagggcatgagcatcatcgcacgtaccgcaggcatcggtcgcaccgtcgaagaactccaa
tgggacttgtcctacctgctgcagctctggagcgccatcgattcggccgcccgtgaaaat
gcagcgcccatcctgatctacctggaatccagcctggtcattcgcgccatccgcgactac
ttttcgcccgacatcggtgaaatcctcatcgataccgaagacattgccgagcaagccact
gcgttcatgagcgtggtcatgcccgacaacgtgggttgcgtcaaaatgtaccgcgacgat
atcccgttgttctcgcgtttccagatcgagcaccagattgaaaccgcctactcgcgcacc
gtccagctgccttccggtggctcagtggtcattgaccacactgaagcgctggtggccgtt
gacgtcaactcggcacgctcgacgcgtggtgccgacattgaagaaaccgccttgcgaacc
aacctggaagccgccgacgaagtcgcgcgccagctgcgtctgcgcgaccttggcggcctg
atcgtcattgacttcatcgacatggaagacggcaagaaccagcgcgctgttgaacagcgc
ctgcgcgatgccctgcacttcgatcgcgcccgcgtgcaaatgggcaagatttcgcgtttt
ggcctgatggaattgtcacgtcagcgcctgcgcccggccctgaatgagggctctcacgtc
acctgcccgcgttgtaacggtaccggcgtcatccgcgatgccgaatccagcgcactgcat
gtcctgcgtttgctgcaggaagaggccatgaaagaaaacacggccgcactgcatgcccag
gtgcccgttgaagtcgccacgttcctgctcaatgaaaaacgtaacgacatcaccaaaatc
gaatcacgcctgaaagttaacctggtcctgattcccaacaagaacctggaaacaccgcat
caccacatcgagcgcttgcgccacgatgaccctcgcatcgaaaatccggccagcagcctc
gaactggttcaggcgcccgaaaccgatatcgcctggcaaccaagcaaagctcaggaagcc
aaaacgcgtcctgaagcgatcgtcaaaagcatcacacacgcgcaaccggccccggttgtg
gtcgcccctgaagcgcctgccgcaaccgctgcacccaccgcagccggccccggcttgttc
aagcgcctgctcaactggctcactggcagcccggcaagcactgaagcggcagccccggct
accgaggacaaacccgctgcgacacgttcagccaatggccagcgcgcatcaaatcgcgga
aaccaggatcgcaaccgcaatcgccgccgcagtggcagcaacggccgtgggcgcgacacc
gaagaaacgacagccgaagcacccgccccgcgtaaagcccgggctgaagccccggttgcc
gagcccgtcacagtggcaccggccgacaacggcccggatacagccgaaggcaaggaagaa
cgctccggttcgcgccggggccgtcgtggccgtggccgcaaccgccgcgaccgcgccacc
gaaggcaatgtcgacaccgatgacaacctgatcgccgataacaccgacttccaggaagcc
accgagacacaggccaccacgccgaaagtggcagaagccgctccggcagtggcggtctcc
gtggctgctgttgccgcgacaacagccattgccgaggaggacgacgaagatatcgactca
accgattccggcacaggcagcgacgataccgaagcaaccgatggcgaacaaaccgagcgc
aagcgccgtcgccgccgcagtcgccgcagccgccgtggtacagacggcagcaaactcgag
tcaggctctgacgatgccgagggcaacgatgagggtaccgacaacgacgctgaaccggta
actccggttgcggtacagacagcccagacaaccattgcggccactgtcacaacgtctgca
acaaccgcaccgggtagtgccgcatcgcctgacgacgtaccggccagtgaactgattgca
ccccgtaccatcgccagcgaaactgctgcaactgcccagacttttggcgccgatatggaa
accgttcctgccaaagcgctgatcgaccttcctgccacctccgctgaaccggcaatcgct
gccgagtccgctgacgtaccggacacgacgtctgtcacggccaagcccgcttcagtgact
acggcgccagccagtgtcgaaagcgcatccgctacagaaaatgtcgagcaggtcacgtca
tccggcatcgcacctgctgcagccgctcgttcagaaccggctccggacaccgcagcaaca
gcagcaccagttgctgccgtgacggcacccgcacaggaacctgtggcttccgaacccgcg
gtagcggtagcggtacccgcagaggctgttgtggctgcagaggctgttgtggctgcagag
gctgttgtggcgacagaacccgccgttgcggtacctgaagaggtacctgttgctacacct
gcagtggcttcaacagtggccgcttctgcggtcaccacggcatcagcatcggcagtcccg
tcatccaacctgtcgacggttattgaagcggccggtcttcagctggtggaaacacgcgct
gagtcgcgggctgctccagccgcaacaccaacagcaccggcacgtctcggtcgcccccgt
aaggccgctccggtcatcgaacacgcgtcactggaacaggtggaaacccagaactcctga
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