Nocardioides aromaticivorans: CFH99_05945
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Entry
CFH99_05945 CDS
T07236
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
naro
Nocardioides aromaticivorans
Brite
KEGG Orthology (KO) [BR:
naro00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
naro03019
]
CFH99_05945 (hrpA)
Enzymes [BR:
naro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CFH99_05945 (hrpA)
Messenger RNA biogenesis [BR:
naro03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CFH99_05945 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
HA2_C
Helicase_C
OB_NTP_bind
DEAD
HA2_N
AAA_22
AAA_19
NACHT
AAA_25
nSTAND3
T2SSE
ResIII
SLFN-g3_helicase
AAA_30
AAA_23
Motif
Other DBs
NCBI-ProteinID:
QSR25162
LinkDB
All DBs
Position
1227552..1231403
Genome browser
AA seq
1283 aa
AA seq
DB search
MKISYPPDLPVSARRDDIAAAIRDHQVVIVAGETGSGKTTQLPKICLELGRGAPAPDDPA
ARPRMIGHTQPRRIAARSVAERIASELGTELGDLVGYQVRFTDKTSKQSRIKLMTDGILL
AELQRDRLLRRYDTIIIDEAHERSLNIDFLLGYLRQLLPKRPDLKLIITSATIDPERFAE
HFADVRTGEPAPIIEVSGRTYPVEVRYRPLMDVPEDDEDGEPIVRDQTEAVVDAVKELSA
EGPGDILVFLPGEREIRDTAEALAPLGESPSTGHSRGIDVLPLYSRLSAAEQHRVFAPAK
GSRRRVVLATNVAETSLTVPGIRYVIDTGVARISRYSARTKVQRLPIEPISQASANQRSG
RCGRVAAGIAIRLYSEEDFEARPEFTDPEILRTNLASVILQMTSLGLGDIARFPFVEPPD
RRNVQAGVQLLEELGAVSAKGDLTKVGRRLARLPIDPRLGRMLLEAERLGCVRDVLVIVA
ALSLQDPRERPGADHPKEQAQADQLHARFKAERSDFLTLLNLWNHLRQQQKELSGSAFRR
MCKREYLNYLRVREWQEFVAQLRQVTKEMGVRLEAPTDLPDADGIHQALLSGLLSHIGLL
EEREKPKPGARRDNRRPGPREYLGARGARFAIFPGSGLARKNPQFVMAGELVETGRLWAR
QNAEIQPQWAERLGAHLVKRSYSEPHWSRKRQAVMATERVTLYGVPLATDRPVNYGRIDP
ELSRELFIRHALVYGEWDTRHHFLRDNKRLLEEAEELEHRARRRDLVVDEHTLFDFYDAR
IPEGIVSGAHFDRWWRDERRQRATLLTFDPAMLTHDAAEEVTEADYPEQWSVAGGLTFPI
SYHFEPGAKDDGLTIDIPVSTLNRVDDDDFSWIVPGLREELVVELIRGLPKALRVNFVPA
PNTARDFLAAVPAGEEPLLGALERYLRSTTGVHVPREAWDLGALPPHLTPSYRVVDERGK
VQGRGKSLAELKAPLQPQFDKAMAAVASDSGVARTGETDWVFDDIADTATWTRAGHEVEA
YPGLVDEGDTVGLQVFGSADERDARHRLGVVRLLLLALGDAPVKGVVDGLSNADKLGLSG
TPYPTTPALIADCLRAVVVDAVDARPPVRSRSGYDDLLATLRSTAPAAVRSTVADLLRVL
ETWREVDRLLSGRADLPLLPALTDLQGQLGRLVHDGFVGEAGAARLRRHRTYLMAMRERR
TALDTGGPAALAKDRQRMDLVQPMQEAWLARVGALPEGRPAGEGLRAIRWMLEEYRVSLW
AQQLSVDGPVSDVRLRKAFDALG
NT seq
3852 nt
NT seq
+upstream
nt +downstream
nt
gtgaagatctcctacccgcccgacctgccggtcagtgcccgtcgcgacgacatcgccgcg
gcgatccgcgaccaccaggtcgtcatcgtcgcgggcgagaccgggtccgggaagaccacg
caactgccgaagatctgcctggagctgggccgtggtgcgccggcccccgacgaccccgcc
gcgcggccgcggatgatcgggcacacccagccccggcggatcgcggcgcgctcggtcgcg
gagcggatcgcctccgagctcgggaccgagctgggcgacctggtcggctaccaggtccgg
ttcaccgacaagacgtcgaagcagagccgcatcaagctgatgaccgacggcatcctgctg
gccgagctgcagcgcgaccggctgctgcgccgctacgacacgatcatcatcgacgaggcg
cacgagcgcagcctcaacatcgacttcctgctcggctacctgcgccagctgctgccgaag
cgtcccgacctcaagctcatcatcacctcggcgaccatcgatcccgagcgcttcgcggag
cacttcgccgacgtacgcacgggcgagccggcgccgatcatcgaggtgtccggccggacc
tatccggtcgaggtccgctaccgacccctgatggacgtgcccgaggacgacgaggacggc
gagccgatcgtccgggaccagaccgaggccgtcgtcgacgcggtcaaggagctctcggcc
gagggacccggtgacatcctcgtcttcctccccggcgagcgggagatccgcgacaccgcc
gaggcgctggcccccctcggcgaaagcccctcaaccgggcacagtcggggaatcgacgtg
ctcccgctctacagccggctctcggccgccgagcagcatcgcgtcttcgccccggccaag
gggtcgcggcggcgcgtcgtgctcgccaccaacgtcgcggagacctcgctgacggtgccc
gggatccgctacgtcatcgacaccggcgtggcccgcatctcccgctactccgcgcgcacc
aaggtccagcggctcccgatcgagccgatcagccaggcctcggccaaccagcgctccggc
cgctgcggccgcgtcgccgccggcatcgcgatccgcctgtactccgaggaggacttcgag
gcgcgccccgagttcaccgatccggagatcctgcgcaccaacctcgcctcggtcatcctg
cagatgacctcgctcgggctgggcgacatcgcccgcttcccgttcgtggagccgccggac
cggcgcaacgtgcaggccggcgtgcagctgctcgaggagctcggtgcggtctccgcgaag
ggcgatctcaccaaggtcgggcggcgcctcgcgcggctcccgatcgacccgcggctgggc
cggatgctgctcgaggccgagcgcctcggctgcgtccgcgacgtgctggtcatcgtcgcc
gcgctctcgttgcaggacccgcgggagcgacccggcgccgaccacccgaaggagcaggcg
caggccgaccagctgcacgcccgcttcaaggccgagcgctcggacttcctcaccctgctc
aacctctggaaccacctgcgccagcagcagaaggagctctccggcagcgccttccgccgg
atgtgcaagcgcgagtacctcaactacctgcgggtgcgggagtggcaggagttcgtcgcg
cagctgcgccaggtgaccaaggagatgggtgtccggctcgaggcccccacggacctcccc
gacgccgatggcatccaccaggcgctgctgtccggcctgctgtcccacatcggcctgctg
gaggagcgggagaagcccaagccgggcgcgcgccgcgacaaccggcgtccggggccgcgg
gagtacctcggcgcccgcggggcgaggttcgcgatcttcccgggcagcggcctggcccgg
aagaacccgcagttcgtgatggccggcgagctggtcgagaccggccggctctgggcccgg
cagaacgccgagatccagccgcagtgggccgagcgcctcggcgcccacctcgtgaagcgg
agctactccgaaccgcactggtcccgcaagcgccaggcggtcatggccaccgagcgggtc
accctctacggcgtcccgctggccaccgaccgtcccgtcaactacgggcggatcgatccc
gagctgtcgcgtgagctcttcatccgccatgccctcgtgtacggcgagtgggacacccgc
caccacttcttgcgcgacaacaagcgcctcctggaggaggccgaggagctcgagcaccgc
gcccggcggcgcgacctcgtcgtcgacgagcacacgctcttcgacttctacgacgcgcgg
atccccgagggcatcgtcagcggcgcccacttcgaccgctggtggcgcgacgagcgccgc
cagcgcgcgacgctgctcaccttcgacccggccatgctgacccacgacgcggccgaggag
gtgaccgaggccgactaccccgagcagtggtcggtcgccggcggcctcaccttccccatc
agctaccacttcgagcccggggcgaaggacgacggcctgaccatcgacatcccggtctcg
acgctcaaccgggtcgacgacgacgacttctcctggatcgtccccgggctgcgcgaggag
ctggtcgtggagctgatccgcgggctgccgaaggcgttgcgcgtcaacttcgtgccggcg
cccaacaccgcgcgcgacttcctggccgccgtcccggcgggggaggagccgctgctcggc
gcgctcgagcgctacctccgctcgacgacgggtgtccacgtgccgcgcgaggcgtgggac
ctcggcgccctgccgccgcacctcaccccgagctaccgcgtcgtcgacgagcgcgggaag
gtccagggccgcggcaagtcgctcgccgagctgaaggcgccgctgcagccgcagttcgac
aaggcgatggccgcggtcgcctccgactccggtgtcgcccgcaccggcgagacggactgg
gtgttcgacgacatcgccgacacggccacgtggacccgcgccgggcacgaggtggaggcc
tatcccggactggtcgacgagggcgacacggtcggcctgcaggtcttcgggtcggccgac
gagcgcgacgcgcgacaccgcctcggcgtcgtacgactgctgttgctggcgctgggcgac
gcgccggtcaagggcgtcgtggacgggctgtccaacgccgacaagctcggcctgtccggc
acgccctacccgaccacgcccgcactgatcgccgactgcctgcgcgccgtcgtcgtcgac
gcggtcgacgcccgcccgcccgtccgctcccgcagtgggtacgacgacctgctggccacc
ctgcgcagcaccgctcccgccgccgtccggagcaccgtggccgacctgctgcgggtgctg
gagacctggcgcgaggtcgaccggctgctcagtggccgcgcggacctgccgctgctgccc
gcgctgaccgacctgcagggccagctcggccggctggtccacgacggcttcgtcggcgag
gccggggcggcccggctgcggcgccaccgcacctacctgatggcgatgcgcgagcgtcgt
acggccctcgacaccggcggtccggccgcgctcgcgaaggaccgccagcggatggacctg
gtgcagccgatgcaggaggcgtggctggcccgcgtcggggcgctgccggagggccggccc
gcgggggaggggctgcgcgcgatccgctggatgctggaggagtaccgcgtctcgctctgg
gcccagcagctcagcgtcgacggcccggtctccgacgtgcggctgcgcaaggccttcgac
gccctcggctga
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